Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017- 06-19] 80 sequences; 53,151,282 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq12 125 1e-23 seq1 114 3e-20 seq56 91.5 3e-13 seq45 86.0 1e-11 >seq12 Length=9596913 Score = 125 bits (138), Expect = 1e-23 Identities = 256/379 (68%), Gaps = 10/379 (3%) Strand=Plus/Plus Query 251562 TTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGT 251621 ||||||||| || | |||||| |||||||||| ||||||||||||||||||||| | Sbjct 6218269 TTCGAAGAAGTTGGTCTTGCCGCCCAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTGGA 6218328 Query 251622 GGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAG 251681 || ||| |||| || || || || || | || |||||||||||| ||||| | Sbjct 6218329 TGCGCGGTAGACCTTGTCATTCCCGAGAGCAACCAGGAGGCGGTCTGCCACGAACTCGAT 6218388 Query 251682 ATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGAT 251741 ||||| ||| || | ||||||||||| | || |||||| | ||||| | Sbjct 6218389 GTACTGCTTCATGAGGTTCGAGTTCATGCCGAGCAGCGCACAAGGCAGGGCCTCGGTCAG 6218448 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG--TGCCAGA 251796 ||| || | ||| | || || || | | || ||| ||| || ||| | Sbjct 6218449 GAACTCTTGCTCGATCTTGACAGCATCGACGATGATCTCCTCGATCATTTGCTTGCTGG- 6218507 Query 251797 GACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCG 251856 || ||||| || | ||| | || || | |||| | ||||||||||||| Sbjct 6218508 ----GCCGGTTCTTCATGTGGGAGAAGAGAAGGCAGGCAAAGTCCGTGTGCAGACCCTCG 6218563 Query 251857 TCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGC 251916 || ||| ||||| ||||||||| | ||||||||||||| || || ||| | ||| Sbjct 6218564 TCACGAGAGATGAGCTCGTTGGAGAAGGTAAGGCCAGGCATCAGGCCGCGCTTCTTCAGC 6218623 Query 251917 CAGAAGATTGCGCAAAAGG 251935 |||||||| | | ||||| Sbjct 6218624 CAGAAGATGGAGGCAAAGG 6218642 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||||||||||| ||||||||||| ||||||||||||| ||| | ||||||| Sbjct 2055106 ATCGCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCG 2055165 Query 142561 AGCCCCACATCGGGC 142575 | |||| |||||||| Sbjct 2055166 ACCCCCGCATCGGGC 2055180 >seq1 Length=15654088 Score = 114 bits (126), Expect = 3e-20 Identities = 363/557 (65%), Gaps = 12/557 (2%) Strand=Plus/Minus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCC 218577 |||||| || ||||||||||||| || ||| | ||| ||| || || || Sbjct 7238067 GACTTCGTCAACAAGGAGCTCATCCTCTTCAGCATGGCTGACAACATGCGCTCGATACCT 7238008 Query 218578 AGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGG 218637 ||| | || ||||| ||||| ||||| ||| || |||| || ||||||||| Sbjct 7238007 TCAGTGATCGACGGCCTGAAGCCTGGACAGCGCAAGGTCATCTTCGCGAGTTTCAAGCGG 7237948 Query 218638 AACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGC 218697 |||||||| | || | ||||||| |||| ||||||| || || || | | | Sbjct 7237947 AACCTGGTAAAGGACAAGAAGGTCGTCGAGTTGGCTGGTTACGTCTCGGAGCAGGCCGCC 7237888 Query 218698 TACCATCACGGTGA-GCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGT 218756 ||||| |||||||| ||| || ||||| ||||||| ||| |||| ||| | | ||| Sbjct 7237887 TACCACCACGGTGAGGCATCGT-TGCAGCAGACCATTGTCGGCTTGGCTCAGAATTTTGT 7237829 Query 218757 GGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGG 218816 || ||||||| |||||| || |||| || | || |||||||| || | || Sbjct 7237828 CGGGTCTAACAACGTGAACTGCCTCGAGCCCAGTGGCAACTTCGGTTCTCGCCTCTCCGG 7237769 Query 218817 TGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCA 218876 |||| ||| || || | || |||||||| |||| || | |||| | Sbjct 7237768 TGGATCTGATGCCGCCAGCGCTCGATACATCTTTACTCGTCTGTCACCATTTGCGCGGCG 7237709 Query 218877 GGTGTTCAAT--CA-GGCCGATGATGTGCTCCTTAAGTATCTTGAGGACG--ATGGTTCT 218931 || ||| | || || ||| ||| || | | | | || |||| | |||| Sbjct 7237708 CGTTTTCTCTGCCATGGACGAGCCTGTTCTACAGCACCAAGTAGATGACGGCAAGGTT-- 7237651 Query 218932 TCGATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAAT 218991 ||||||||| || ||| | || | |||||| | | || || || |||||| | Sbjct 7237650 ---ATTGAGCCCAAGGTGTACGCACCCGTTATTCCTATGGTCCTGGTCAACGGTGCCGAC 7237594 Query 218992 GGTATCGGGACAGGGTTCAGTACTGACATTCCTTCTTACAATCCCAAGGACATCATTGAC 219051 |||||||| || || | ||||| || || ||| | |||||||||||| | || Sbjct 7237593 GGTATCGGCACTGGTTGGAGTACGTCAATCCCCAACTACCACCCCAAGGACATCGTCGAG 7237534 Query 219052 AACGTCAAGCGTCTCAT 219068 ||| | ||||| | ||| Sbjct 7237533 AACCTGAAGCGACGCAT 7237517 Score = 100 bits (110), Expect = 6e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || ||||| ||||| |||| ||||| ||||| || |||| ||||| ||||| ||| Sbjct 6003337 GGCGAGGACCTGTGCAACTGCACCTTCTCCCTCGCCTACGGTGCCAAGATCCTGCTGAAC 6003278 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | |||| | | ||||||||| | || || ||||| ||||||||| || || Sbjct 6003277 CAGACGCACCTCCGCCTGAAGCGTGGCCAGCGCTACGGTCTGTGCGGTCCCAACGGTTCG 6003218 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| || || ||||||||||| |||| ||| | || || || || || ||| Sbjct 6003217 GGCAAGTCGACCCTCATGCGCGCCATCAACAACGAGCAGGTCGAGGGCTTCCCCAA-GCA 6003159 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGA 279562 |||||| | ||| |||| || |||||||| |||| Sbjct 6003158 GAGTGAGGTCAAGACCGTGTTCGTTGAGCACGATCTCGA 6003120 >seq56 Length=2992104 Score = 91.5 bits (100), Expect = 3e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 279705 CTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGAT 279764 || || || ||||||||||||||||| || || ||||||| || || | | |||||| Sbjct 1303265 CTCTCAGGAGGTTGGAAGATGAAGCTCGCTCTGGCTCGCGCTATGCTCCAAAGGGCCGAT 1303324 Query 279765 GTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTG 279824 ||||| || ||||| ||||| || |||||| ||||| ||||| | || ||||| | | Sbjct 1303325 GTCCTGCTACTTGACGAGCCTACTAACCACCTGGACGTTGCCAACATCGCGTGGCTCGAG 1303384 Query 279825 TCCTACCT 279832 |||||| Sbjct 1303385 AACTACCT 1303392 >seq45 Length=5506958 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||||||||||| ||||||||||| ||||||||||||| ||| | ||||||| Sbjct 4969510 ATCGCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCG 4969451 Query 142561 AGCCCCACATCGGGC 142575 | |||| |||||||| Sbjct 4969450 ACCCCCGCATCGGGC 4969436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027835746467280