Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017-
06-19] 80 sequences; 53,151,282 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq12 125 1e-23
seq1 114 3e-20
seq56 91.5 3e-13
seq45 86.0 1e-11
>seq12
Length=9596913
Score = 125 bits (138), Expect = 1e-23
Identities = 256/379 (68%), Gaps = 10/379 (3%)
Strand=Plus/Plus
Query 251562 TTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGT 251621
||||||||| || | |||||| |||||||||| ||||||||||||||||||||| |
Sbjct 6218269 TTCGAAGAAGTTGGTCTTGCCGCCCAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTGGA 6218328
Query 251622 GGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAG 251681
|| ||| |||| || || || || || | || |||||||||||| ||||| |
Sbjct 6218329 TGCGCGGTAGACCTTGTCATTCCCGAGAGCAACCAGGAGGCGGTCTGCCACGAACTCGAT 6218388
Query 251682 ATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGAT 251741
||||| ||| || | ||||||||||| | || |||||| | ||||| |
Sbjct 6218389 GTACTGCTTCATGAGGTTCGAGTTCATGCCGAGCAGCGCACAAGGCAGGGCCTCGGTCAG 6218448
Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG--TGCCAGA 251796
||| || | ||| | || || || | | || ||| ||| || ||| |
Sbjct 6218449 GAACTCTTGCTCGATCTTGACAGCATCGACGATGATCTCCTCGATCATTTGCTTGCTGG- 6218507
Query 251797 GACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCG 251856
|| ||||| || | ||| | || || | |||| | |||||||||||||
Sbjct 6218508 ----GCCGGTTCTTCATGTGGGAGAAGAGAAGGCAGGCAAAGTCCGTGTGCAGACCCTCG 6218563
Query 251857 TCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGC 251916
|| ||| ||||| ||||||||| | ||||||||||||| || || ||| | |||
Sbjct 6218564 TCACGAGAGATGAGCTCGTTGGAGAAGGTAAGGCCAGGCATCAGGCCGCGCTTCTTCAGC 6218623
Query 251917 CAGAAGATTGCGCAAAAGG 251935
|||||||| | | |||||
Sbjct 6218624 CAGAAGATGGAGGCAAAGG 6218642
Score = 86.0 bits (94), Expect = 1e-11
Identities = 64/75 (85%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560
|| |||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||
Sbjct 2055106 ATCGCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCG 2055165
Query 142561 AGCCCCACATCGGGC 142575
| |||| ||||||||
Sbjct 2055166 ACCCCCGCATCGGGC 2055180
>seq1
Length=15654088
Score = 114 bits (126), Expect = 3e-20
Identities = 363/557 (65%), Gaps = 12/557 (2%)
Strand=Plus/Minus
Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCC 218577
|||||| || ||||||||||||| || ||| | ||| ||| || || ||
Sbjct 7238067 GACTTCGTCAACAAGGAGCTCATCCTCTTCAGCATGGCTGACAACATGCGCTCGATACCT 7238008
Query 218578 AGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGG 218637
||| | || ||||| ||||| ||||| ||| || |||| || |||||||||
Sbjct 7238007 TCAGTGATCGACGGCCTGAAGCCTGGACAGCGCAAGGTCATCTTCGCGAGTTTCAAGCGG 7237948
Query 218638 AACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGC 218697
|||||||| | || | ||||||| |||| ||||||| || || || | | |
Sbjct 7237947 AACCTGGTAAAGGACAAGAAGGTCGTCGAGTTGGCTGGTTACGTCTCGGAGCAGGCCGCC 7237888
Query 218698 TACCATCACGGTGA-GCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGT 218756
||||| |||||||| ||| || ||||| ||||||| ||| |||| ||| | | |||
Sbjct 7237887 TACCACCACGGTGAGGCATCGT-TGCAGCAGACCATTGTCGGCTTGGCTCAGAATTTTGT 7237829
Query 218757 GGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGG 218816
|| ||||||| |||||| || |||| || | || |||||||| || | ||
Sbjct 7237828 CGGGTCTAACAACGTGAACTGCCTCGAGCCCAGTGGCAACTTCGGTTCTCGCCTCTCCGG 7237769
Query 218817 TGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCA 218876
|||| ||| || || | || |||||||| |||| || | |||| |
Sbjct 7237768 TGGATCTGATGCCGCCAGCGCTCGATACATCTTTACTCGTCTGTCACCATTTGCGCGGCG 7237709
Query 218877 GGTGTTCAAT--CA-GGCCGATGATGTGCTCCTTAAGTATCTTGAGGACG--ATGGTTCT 218931
|| ||| | || || ||| ||| || | | | | || |||| | ||||
Sbjct 7237708 CGTTTTCTCTGCCATGGACGAGCCTGTTCTACAGCACCAAGTAGATGACGGCAAGGTT-- 7237651
Query 218932 TCGATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAAT 218991
||||||||| || ||| | || | |||||| | | || || || |||||| |
Sbjct 7237650 ---ATTGAGCCCAAGGTGTACGCACCCGTTATTCCTATGGTCCTGGTCAACGGTGCCGAC 7237594
Query 218992 GGTATCGGGACAGGGTTCAGTACTGACATTCCTTCTTACAATCCCAAGGACATCATTGAC 219051
|||||||| || || | ||||| || || ||| | |||||||||||| | ||
Sbjct 7237593 GGTATCGGCACTGGTTGGAGTACGTCAATCCCCAACTACCACCCCAAGGACATCGTCGAG 7237534
Query 219052 AACGTCAAGCGTCTCAT 219068
||| | ||||| | |||
Sbjct 7237533 AACCTGAAGCGACGCAT 7237517
Score = 100 bits (110), Expect = 6e-16
Identities = 155/219 (71%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
|| ||||| ||||| |||| ||||| ||||| || |||| ||||| ||||| |||
Sbjct 6003337 GGCGAGGACCTGTGCAACTGCACCTTCTCCCTCGCCTACGGTGCCAAGATCCTGCTGAAC 6003278
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
|| | |||| | | ||||||||| | || || ||||| ||||||||| || ||
Sbjct 6003277 CAGACGCACCTCCGCCTGAAGCGTGGCCAGCGCTACGGTCTGTGCGGTCCCAACGGTTCG 6003218
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524
|| ||| || || ||||||||||| |||| ||| | || || || || || |||
Sbjct 6003217 GGCAAGTCGACCCTCATGCGCGCCATCAACAACGAGCAGGTCGAGGGCTTCCCCAA-GCA 6003159
Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGA 279562
|||||| | ||| |||| || |||||||| ||||
Sbjct 6003158 GAGTGAGGTCAAGACCGTGTTCGTTGAGCACGATCTCGA 6003120
>seq56
Length=2992104
Score = 91.5 bits (100), Expect = 3e-13
Identities = 97/128 (76%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 279705 CTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGAT 279764
|| || || ||||||||||||||||| || || ||||||| || || | | ||||||
Sbjct 1303265 CTCTCAGGAGGTTGGAAGATGAAGCTCGCTCTGGCTCGCGCTATGCTCCAAAGGGCCGAT 1303324
Query 279765 GTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTG 279824
||||| || ||||| ||||| || |||||| ||||| ||||| | || ||||| | |
Sbjct 1303325 GTCCTGCTACTTGACGAGCCTACTAACCACCTGGACGTTGCCAACATCGCGTGGCTCGAG 1303384
Query 279825 TCCTACCT 279832
||||||
Sbjct 1303385 AACTACCT 1303392
>seq45
Length=5506958
Score = 86.0 bits (94), Expect = 1e-11
Identities = 64/75 (85%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560
|| |||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||
Sbjct 4969510 ATCGCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCG 4969451
Query 142561 AGCCCCACATCGGGC 142575
| |||| ||||||||
Sbjct 4969450 ACCCCCGCATCGGGC 4969436
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027835746467280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |