Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017- 06-19] 80 sequences; 53,151,282 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1 706 0.0 seq12 242 7e-59 >seq1 Length=15654088 Score = 706 bits (782), Expect = 0.0 Identities = 1465/2146 (68%), Gaps = 80/2146 (4%) Strand=Plus/Plus Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796 ||| ||||||||| || | |||| || | ||| | ||||||||||||||| |||||| Sbjct 14219674 ACGGTGAACTGGATAGGCTGGGCGGCAGCTTGGGTGCGCAGGTAGTACATGCCCGTCTTG 14219733 Query 243797 AGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGG 243856 || || |||| || || |||||| | ||| | ||| ||| || ||| Sbjct 14219734 AGGCCTAGCTTCCAGCCGGCGAAGTGCATAGACGTTATCTTGCCCATGGTGGGCT----- 14219788 Query 243857 TCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCC-CGCTC 243915 ||| || || |||||| ||||| ||||||| ||||| |||| || || Sbjct 14219789 -------CGCGCATGTGGATGTTGAGCGACTGCGATTGGTCGATGAAGG-CGCCGCGGTC 14219840 Query 243916 TGCGGCCATGGTGATGA-GGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCT 243974 || ||||| || || ||| | ||| || ||||| | |||||||||| | | ||| Sbjct 14219841 AGCCGCCATCTGGACGACGGTGCG-CTGCGAGATCTCCCAGACCGTCTTGTACAGGCGCT 14219899 Query 243975 TGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGG 244034 || | |||||||| | |||||||||| | ||||| | | |||||| || Sbjct 14219900 TGGTATCCTCGGGGATGCTGGCGATGTTCTGGATGGAGCCGCCCTCGGCGATGATGCGGT 14219959 Query 244035 TGCGCATGTTATCGTTCCACAGGCCCAAGCGCT-CCAGCGCCTCGACCAGGTGCCT---G 244090 | |||||| ||| ||||| ||| |||| | |||| ||| |||| ||| | Sbjct 14219960 TCTTCATGTTGTCGGACCACAAGCC-AAGCTCGACCAGGTCCTT---CAGGAGCCATGGG 14220015 Query 244091 TTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGC 244150 || || ||||| ||||| || | |||||||| |||||||||| |||| || ||| Sbjct 14220016 TTGACGACCTGGAACTCGCCGGCGAGCACGCGACGCTGGTAGATGTTGGACGTGTAGGGC 14220075 Query 244151 TCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACC 244210 |||| || ||| |||||||||| ||||||| |||||| || || |||||||||| ||| Sbjct 14220076 TCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGCTGGCGGTGGGCATGGGCGCCACA 14220135 Query 244211 AGCAGACTGTTCCTCACGCCGTGCCTCTGGATG-CGGAGTCTGAGCTCGTTCCAGTCCCA 244269 ||||| ||| | ||| |||||| || |||| | | | ||||| | ||||||||| Sbjct 14220136 AGCAGCGAGTTGCGCACACCGTGCTGCTTGATGTCCGCCT-TGAGCGACTCCCAGTCCCA 14220194 Query 244270 CATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCT 244329 | |||| || | |||| | ||||||||| ||||||| | |||| Sbjct 14220195 GAGCTCCGA--------CG-GCTTGACGTTCCACATGTCGTACTGCAGGATGCCCTGCGA 14220245 Query 244330 GACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGT-CGCGCTGGGCCAGCTTACAGCTCT 244388 || || ||||||||| |||| ||||| || | | ||| | ||||||| || Sbjct 14220246 CACAGGCGAGCCCTCGTATGTCGAGTAGGTGCCCTGCTCGC-GCGCCAGCTCGCACGAGG 14220304 Query 244389 CGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGC 244448 || |||||||||| |||||||||||| |||||| |||||| | ||||| |||| | Sbjct 14220305 CGGTCAGGGCGGCGTGGTAGATGGTCTCAAAGATCTGCTTGTTGAGCTCGCGAGCCTCGG 14220364 Query 244449 CGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGC 244508 | |||||| | || || | | |||| | |||||||| ||||||||||| | || Sbjct 14220365 GAGACTCGAAGGGCAGGCGCAGCGCTAGGAAGGCATCGGCCAGACCCTGCACGCCTAGGC 14220424 Query 244509 CGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGT 244568 ||||||| | ||| ||| |||| | || || | || ||||| ||||| ||| Sbjct 14220425 CGATGGGCCGGTGGCGCAGGTTGCTGTTACGAGCCTCCTGGACCGGGTAGTAGTTGACGT 14220484 Query 244569 CGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGT 244628 |||| | |||||| || || || || | || || ||| |||| | | |||| Sbjct 14220485 CGATGATCTTGTTAAGATTACGAACGACGACCTGGGTCACCTCGTGCAGCTTCCGGAAGT 14220544 Query 244629 CGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGG 244688 | || || ||||| | || || ||||||| || || | | Sbjct 14220545 CATAGGCGC------CCTCG----TTGTAGTCG--ACAAACTGCGGCAGCGCCAACGACG 14220592 Query 244689 CCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGT 244748 |||||||||| || |||||||| || | | | ||||| ||| ||||||||||| |||| Sbjct 14220593 CCAGGTTGCACACAGCCACCTCATCGG-GCGCGAGTACTCGACGATCTCGGTGCACAGGT 14220651 Query 244749 TACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGT 244808 || || |||||||||||||| || || ||| |||| ||||||| ||| |||| Sbjct 14220652 TAGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCTTTGT 14220711 Query 244809 AGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCC 244868 | ||||||||||| || |||||| |||||| |||||| | | ||| || | Sbjct 14220712 ACAGCATGAAGGGGTTGCCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCACAGCTTTT 14220771 Query 244869 TAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGA 244928 ||||||| |||| |||| |||||||||| |||||| ||||| ||||||| Sbjct 14220772 GCGCCTTGAGCGTCTTGCGGCCCTTGCCCTCACGCTCGTACTTTTCGTACAAAGCCTCGA 14220831 Query 244929 ACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACT 244988 ||||| ||| || || ||||||| |||||| ||||||||||| |||| | Sbjct 14220832 ACTCGTCGCCGTAGCAGTCTGCTAGGCCAGGGCACTCGTTGGGGCACATGAGCGTCCAGT 14220891 Query 244989 CGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGT 245048 ||||| | || |||| || |||||| ||||| |||||||| |||||| |||| |||| Sbjct 14220892 CGCCGTTCTTCTCAACCCGCTTCATGAATAGGTCTGGGATCCATAGGGCCAGGAAAAGGT 14220951 Query 245049 CCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGT 245108 | | || | ||| ||| ||| |||||| | ||| || | || || || |||| Sbjct 14220952 CGCGGGCGCGGATCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCGAGGAACTCGAACACGT 14221011 Query 245109 CGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGT 245168 || ||||||| ||||||| |||| || | ||||||||| ||||||||||| ||||||| Sbjct 14221012 CGGCGTGCCACGGCTCCAGATAGATGGCAAAGGCGCCGGGGCGCTTGTTGCCACCCTGGT 14221071 Query 245169 CCAC-CATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGG 245227 | || | | || | |||||| | || || | ||||| |||||||| || | Sbjct 14221072 CGACGTAACGGGCCGTG-TTGTTGAAAACACGTAGCATGGGCACGATGCCGTTGGATGTG 14221130 Query 245228 CCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACAT----GCC 245283 ||||||||||| |||||||| |||| || | | || ||| | |||| || ||| Sbjct 14221131 CCGTTGGTGCCGGCGATGTAGGAGCCCGTGGC---GCGGATGC-GGTGGATATTGAGGCC 14221186 Query 245284 TAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTC 245343 | |||||||| ||||||||| | ||| ||| | |||| |||||| || || || Sbjct 14221187 GATACCGCCGGCCATCTTGGAGATCATGGCACAGGTTTTGAGGGTGTCGTAGATACCATC 14221246 Query 245344 CATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCA 245403 |||||||| |||||||| || ||| ||||| || |||||||||| || ||| ||| Sbjct 14221247 GATGCTGTCGTCCTTCATGTCGACCAGGAAGCACGACGACAGCTGGGCCTGGGGCGTGCC 14221306 Query 245404 CGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTACGT 245463 | |||||| |||||||| ||||||||| ||||| |||||| | || |||||| Sbjct 14221307 GGCGTTGAAGAGAGTGGGAGAGGCGTGGGTGAAGTACTTGCTCGACATGAGGTTGTACGT 14221366 Query 245464 CTGGAGCA-GAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCACCTCATGAGGGTGT 245522 || ||||| | || |||||||||||||| ||| | ||| | ||||| ||| Sbjct 14221367 CTCGAGCACGCGC-TCGATGTTGTCGCCCCAGATGCCGACAGCGACGCGCATGATCATGT 14221425 Query 245523 GCT-GGGGCG-TC-TCGATGGGTCCCTCGGGTCCCTTGAGCATGTAGGAGCGCTCGAGCG 245579 ||| |||||| || |||| || ||| | |||||||| ||| |||||||| || | Sbjct 14221426 GCTGGGGGCGCTCGACGATCTTGCCGTCGAG---CTTGAGCAGGTACGAGCGCTCCAGGG 14221482 Query 245580 TCTTGAACCCAAAGTACGAGTAGCCAAAGTCGGCGTGGTGCCTGACGGCTGCGTCGAGTC 245639 ||||||| ||||||||| ||| ||||| || | || ||| | ||||| | Sbjct 14221483 TCTTGAAGCCAAAGTACTGATAGTTGAAGTCCCGGTCATAGACGATGGCCGAGTCGA-AC 14221541 Query 245640 TC-TCGGCGTGCTTCTGACTGACCTCGTAAAACTTTTGCGCTATGAGGGGAG---CCCTG 245695 || || ||| | | | ||||| | ||| || || | ||| | |||| Sbjct 14221542 TCGTCCTTGTGGCGCATAACGCAGTCGTACGTTTCTTGGGCGATCATGGGCGACAGCCTG 14221601 Query 245696 AGCCCGGTGTCCGGATTGACGT--TGAACCAGAGCCTCTTGCACACCTCCGAGAACTTGG 245753 ||| | | || ||||||| || | ||| | | || || ||| |||||||| Sbjct 14221602 ---CCGTTCTTGGGGTTGACGTAGTGGAACAG-GTCGCTGACA-ACCGACGAGAACTGCT 14221656 Query 245754 GGCTGGTGAGCTTATGCAGGTTGGTGACTGCTATGCGCGCCGCCAACTTGCTGTAGTCGG 245813 |||| |||| |||||||||| || || |||||||| |||| || |||||||| Sbjct 14221657 TCTTGGTCTGCTTGTGCAGGTTGGACACGGCAATGCGCGCGGCCAGGATGGCGTAGTCGG 14221716 Query 245814 GGTGAGTGGTGGTCATGTTGGAGGCCGTGTGGGCCAGCAGCTCGTC 245859 |||||||| |||||||| | |||||| | ||| ||| ||||| Sbjct 14221717 GGTGAGTGACGGTCATGTACGCGGCCGTTTCGGCGGCCAGGTCGTC 14221762 >seq12 Length=9596913 Score = 242 bits (268), Expect = 7e-59 Identities = 370/519 (71%), Gaps = 15/519 (3%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGAT---CGAGAGTCCCGACG-C 42688 || |||||| |||||||| |||||||| | || ||||| ||| | || | | Sbjct 6218757 CCATGCATCCGTAAGAAGGCCGACTGGGCTTTGAAGTGGATTTCCGACAA----GAAGTC 6218702 Query 42689 AACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGC 42748 || || | | | |||| | |||||| ||||||| ||||| ||||||||| || || Sbjct 6218701 GACCTTTGCCTCGCGGCTCATTGCCTTTGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGC 6218642 Query 42749 CTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAA 42808 ||| ||||||||||||||||| ||| || | |||||| || || |||||||| || Sbjct 6218641 CTTTGCCTCCATCTTCTGGCTGAAGAAGCGCGGCCTGATGCCTGGCCTTACCTTCTCCAA 6218582 Query 42809 CGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAG 42868 ||| |||||| | |||||||| ||||| | ||||||||||||||| || ||||| Sbjct 6218581 CGAGCTCATCTCTCGTGACGAGGGTCTGCACACGGACTTTGCCTGCCTTCTCTTCTC--- 6218525 Query 42869 CCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGA 42928 |||| | | | || |||| ||| | | || || |||||| || || || | Sbjct 6218524 CCACATGAAGAACCGGCCCAGCAAGCAAATGATCGAGGAGATCATCGTCGATGCTGTCAA 6218465 Query 42929 GATCGAGAAGGAGTTCCTCACGCAGTCGCTGCC-CGTGTCCCTGGTCGGCATGAACCACG 42987 ||||||| | |||||||| || || | ||||| ||| | ||| ||||||||||| Sbjct 6218464 GATCGAGCAAGAGTTCCTGACCGAGGCCCTGCCTTGTG-CGCTGCTCGGCATGAACTCGA 6218406 Query 42988 ACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTC 43046 |||||||| |||||||| ||| ||| || |||| ||||| || | ||| | Sbjct 6218405 ACCTCATGAAGCAGTACATCGAGTTCGTGGCAGACCGCCTCCTGGTTGCTCTCGGGAATG 6218346 Query 43047 AGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGC 43106 | | ||||| | | | |||||||||||| |||||||||||||| ||| ||| Sbjct 6218345 A-CAAGGTCTACCGCGCATCCAACCCCTTCGACTTCATGGAGAACATCTCTCTGGGCGGC 6218287 Query 43107 AAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||||||||||| ||||| |||||||| | ||| |||||| Sbjct 6218286 AAGACCAACTTCTTCGAAAAGCGCGTGGGCGAGTACCAG 6218248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338255660800