Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017- 06-19] 80 sequences; 53,151,282 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 3e-14 seq12 87.8 4e-12 >seq1 Length=15654088 Score = 95.1 bits (104), Expect = 3e-14 Identities = 173/251 (69%), Gaps = 2/251 (1%) Strand=Plus/Plus Query 334105 AGTCAATGATAGCCATGTTAGAATCGGACCCGTCGAGATCGTGTTCCACGTAAGCAGTTT 334164 |||||||| | | ||| | || |||| | ||||||||||| || ||| | | || | Sbjct 6003088 AGTCAATGGTGGTCATCTCAGTGTCGGCGGCATCGAGATCGTGCTCAACGAACACGGTCT 6003147 Query 334165 TCAAAACA-TCCGCAGAGGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGA 334223 | | || || || |||||| || || | ||| |||| || |||||||| || Sbjct 6003148 TGACCTCACTCTGCTT-GGGGAAGCCCTCGACCTGCTCGTTGTTGATGGCGCGCATGAGG 6003206 Query 334224 GTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTG 334283 || || || |||| ||||| || || |||||||||||||| | ||||||||||| | Sbjct 6003207 GTCGACTTGCCCGAACCGTTGGGACCGCACAGACCGTAGCGCTGGCCACGCTTCAGGCGG 6003266 Query 334284 AACCGCGTATTGTTCAGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACAC 334343 | |||| | |||||| || || || |||| || || || || || || | ||| Sbjct 6003267 AGGTGCGTCTGGTTCAGCAGGATCTTGGCACCGTAGGCGAGGGAGAAGGTGCAGTTGCAC 6003326 Query 334344 AGATCCTCACC 334354 || ||||| || Sbjct 6003327 AGGTCCTCGCC 6003337 >seq12 Length=9596913 Score = 87.8 bits (96), Expect = 4e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 243568 GGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATC 243627 ||||||||||| | |||||| ||||||||||| ||||| || |||||| | | | Sbjct 6218418 GGCATGAACTCGAACCTCATGAAGCAGTACATCGAGTTCGTGGCAGACCGCCTCCTGGTT 6218359 Query 243628 GCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATT 243687 || || || |||| || || ||| | | |||||||| | ||| |||||| ||| Sbjct 6218358 GCTCTCGGGAATGACAAGGTCTACCGCGCATCCAACCCCTTCGACTTCATGGAGAACATC 6218299 Query 243688 TCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGCCCTGGT 243747 || || || || || ||||||||||||||||| || | || || || ||||| Sbjct 6218298 TCTCTGGGCGGCAAGACCAACTTCTTCGAAAAGCGCGTGGGCGAGTACCAGAAAGCTGGT 6218239 Query 243748 GTGATG 243753 || ||| Sbjct 6218238 GTCATG 6218233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102878869548000