Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017-
06-19] 80 sequences; 53,151,282 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq23 125 8e-24
seq67 111 2e-19
seq1 104 3e-17
>seq23
Length=7462253
Score = 125 bits (138), Expect = 8e-24
Identities = 158/216 (73%), Gaps = 1/216 (0%)
Strand=Plus/Minus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||||| ||| | || | ||||||||||| || || ||||| || | ||| || || |
Sbjct 7209986 ACGCAGCACTAGGTGTAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGGCC 7209927
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
|| || ||||| || || || || || || ||||||||||| | || | || ||||||
Sbjct 7209926 ATCCTCCAGCTGTTTGCCCGCAAAGATCAGGCGCTGCTGGTCAGGGGG-ATGCCCTCCTT 7209868
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172
|||| ||| || |||| | | | |||||||||||| ||||| || | |||||
Sbjct 7209867 GTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGCTCGACTCCACCTCAAGGGTGAT 7209808
Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| |||||||| || ||||| |||||||| |||||
Sbjct 7209807 AGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 7209772
>seq67
Length=2709248
Score = 111 bits (122), Expect = 2e-19
Identities = 145/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 42012 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 42071
||||||||||| || || ||||| || | |||||||| |||| || |||||||| ||
Sbjct 458935 GTGCTCTCCTTCTGGATGTTGTAGTCGGAAAGAGTCCGACCGTCCTCGAGCTGCTTCCCG 458994
Query 42072 GCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTT 42130
||||| || || ||||||||||||| || | | |||||||||| ||| | || | ||
Sbjct 458995 GCGAAGATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCC-TGAATCTTCGACTT 459053
Query 42131 GAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 42190
|| | | | ||||| || ||||| || | |||||||| |||||||| || ||
Sbjct 459054 GACATTGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATGGTCTTGCCCGTCAGGGT 459113
Query 42191 CTTTACAAAGATTTGCAT 42208
|| || || || |||||
Sbjct 459114 TTTGACGAAAATCTGCAT 459131
Score = 109 bits (120), Expect = 6e-19
Identities = 156/217 (72%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||| | |||||| || | ||||||||||| || || |||||||| | |||||| || |
Sbjct 458688 ACGAAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGACAGAGTGCGACC 458747
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
||| || |||||||| || || || || | || ||||| || | || | | ||||||
Sbjct 458748 GTCCTCCAGCTGCTTGCCCGCAAAGATCAAACGTTGCTGATCCGGGGGGATACCCTCCTT 458807
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171
|| | ||| | || | | ||| | | | |||||| || || || || | |||||
Sbjct 458808 GT-CTTGAATCTTCGACTTCACGTTGTCGATCGTGTCTGATGACTCGACTTCCAGCGTGA 458866
Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|||| ||||| || |||||||| || ||||| |||||
Sbjct 458867 TGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 458903
Score = 100 bits (110), Expect = 3e-16
Identities = 125/169 (74%), Gaps = 2/169 (1%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
||| ||||| || ||||| || | || ||||| |||| || || ||||| ||||||||
Sbjct 459168 CTCTTTTTGGATGTTGTAGTCCGAGAGGGTCCGGCCGTCCTCGAGTTGCTTGCCAGCGAA 459227
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
||||| ||||||||||||| || | | |||||||||| ||| || |||| |||
Sbjct 459228 GATGAGGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 459286
Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 42184
| | | || ||| || ||||| |||| |||||||| ||||||||
Sbjct 459287 TGTCGATGGTATCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGT 459335
Score = 98.7 bits (108), Expect = 1e-15
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| ||||| ||||| || | || || || | || || |||||||| || |||||
Sbjct 458484 CTCCTTCTGAATGTTGTAGTCCGACAAGGTACGGCCATCCTCCAGCTGCTTGCCCGCGAA 458543
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
|| || ||||||||||| | || | || |||||| ||| ||| || || | |
Sbjct 458544 GATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTATCCTGGATCTTGCTCTTTACGTT 458603
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | ||| ||| ||||| || |||| |||||||||||| || || | ||||| ||
Sbjct 458604 ATCAATCGTATCGGATGATTCGACTTCGAGCGTGATGGTTTTTCCAGTCAAGGTCTTCAC 458663
Query 42197 AAAGATTTGCAT 42208
||||| |||||
Sbjct 458664 GAAGATCTGCAT 458675
>seq1
Length=15654088
Score = 104 bits (114), Expect = 3e-17
Identities = 132/182 (73%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078
|||| || || ||||| || | ||||||||| | || || |||||||| |||||||| |
Sbjct 11956322 CCTTCTGGATGTTGTAGTCGGACAGAGTCCGGCCATCCTCAAGCTGCTTGCCAGCGAAAA 11956381
Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138
|||| ||||||||||||| || | || |||||||||| ||| || || | |
Sbjct 11956382 TGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGT 11956441
Query 42139 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 42198
| | |||||| || || || || | |||||||| ||||| || || ||||| || |
Sbjct 11956442 CGATCGTGTCCGAGGACTCGACCTCCAGAGTGATGGTCTTGCCAGTAAGGGTCTTCACGA 11956501
Query 42199 AG 42200
||
Sbjct 11956502 AG 11956503
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543212256787200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |