Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017- 06-19] 80 sequences; 53,151,282 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1 165 8e-36 seq67 116 4e-21 seq23 111 1e-19 seq12 104 2e-17 >seq1 Length=15654088 Score = 165 bits (182), Expect = 8e-36 Identities = 1001/1569 (64%), Gaps = 80/1569 (5%) Strand=Plus/Plus Query 146034 CAAG-TCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAA 146092 |||| || || ||| |||| | ||| | ||||||| ||||| |||||||||||||| | Sbjct 14219984 CAAGCTCGACCAGGTCCTTCAGGAGCCATGGGTTGACGACCTGGAACTCGCCGGCGAGCA 14220043 Query 146093 CGCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCT 146152 |||| | | | || | |||| ||| | |||||||| |||||||||| || || |||| Sbjct 14220044 CGCGACGCTGGTAGATGTTGGACGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCT 14220103 Query 146153 GCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG-TCTT 146211 ||| ||| | ||||| |||||| |||||| |||| ||||| | ||| ||||| | | Sbjct 14220104 GCGACGTGCTGGCGGTGGGCATGGGCGCCACAAGCAGCGAGTTGCGCACACCGTGCTGCT 14220163 Query 146212 TGAATCTTTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAG 146271 || || | || || ||| | ||| | | |||| || | || || | Sbjct 14220164 TG-ATGTCCGCCTTGAGCGACTCCCAGTCCCAGA---GCTCCGACGGCTTGACGTTCCAC 14220219 Query 146272 TTGTCGTAATGCATAGTGCC--GCGGAACAGG-GGGCTATTCTCGTACGATTCATAAGGA 146328 ||||||| |||| |||| ||| ||||| | || |||||| | | | ||| Sbjct 14220220 ATGTCGTACTGCAGGATGCCCTGCGACACAGGCGAGC---CCTCGTATG-TCGAGTAGGT 14220275 Query 146329 CCGTCGATCTTG-GCCAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGC 146387 | | || | ||||| ||||| || ||| || | ||| |||||||| Sbjct 14220276 GCCCTGCTCGCGCGCCAGCTCGCACGAGGCGGTCAGGGCGGCGTGGTAGATGGTCTCAAA 14220335 Query 146388 GATCATGTAGTTGACGCTC-CTGGCCTCCTCGCTGTCGTAGGGGATATCGAGAAGC---A 146443 |||| | ||||| |||| | ||||| ||| |||| | | | ||| | Sbjct 14220336 GATCTGCTTGTTGA-GCTCGCGAGCCTCGGGAGACTCGAAGGGCA---GGCGCAGCGCTA 14220391 Query 146444 CAAAGGCGTCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGT 146503 ||||| ||||| |||||||| | || | || | ||| ||||| | ||| |||| Sbjct 14220392 GGAAGGCATCGGCCAGACCCTGCACGCCTAGGCCGATGGGCCGGTGGCGCAGGTTGCTGT 14220451 Query 146504 T-CGCAGCGCCCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACG 146562 | || | || | | ||| |||| |||| ||||||||||||||| |||||||| ||| Sbjct 14220452 TACGAGCCTCCTGGACCGGG-TAGTAGTTGACGTCGATGATCTTGTTAAGATTACGAACG 14220510 Query 146563 ACAATTTTCGTCAAACGATTCAG---CAGGACATAGTCAAA--TGTTTTAGTTTTAACGT 146617 || | | |||| | ||| | ||| ||||| | | | ||| || || Sbjct 14220511 ACGACCTGGGTCACCTCGTGCAGCTTCCGGA---AGTCATAGGCGCCCTCGTTGTA--GT 14220565 Query 146618 TGACGCACTTGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGC 146677 ||| ||| | || | || |||| ||| || || || ||| || | ||| Sbjct 14220566 CGACAAACTGCGGCAGCGCCAACGACGCCAGGTTGCACACAGCCACCTCATC--GGGCGC 14220623 Query 146678 -AATACTGCACAATCTCGGCGCAGAGGTT---GCTGCACTTGATGATGCCCAAAtttttt 146733 | |||| || ||||||| ||| ||||| ||||| |||| |||||| || || Sbjct 14220624 GAGTACTCGACGATCTCGGTGCACAGGTTAGAGCTGC---GGATGGTGCCCAGGTTCTTC 14220680 Query 146734 tGGTTACTAAACTT---GTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCG 146790 ||||| || ||| ||||||| |||| ||||| |||||| | || || || ||| Sbjct 14220681 TGGTTGCT---CTTGCGGTTGCAGTGGTCTTTGTACAGCATGAAGGGGTTGCCAGTCTCG 14220737 Query 146791 ACATTGGTCTCGACGATGAATCTAAACAAATCTCTGGC-CTTTACTTGTCTTTCGTACAG 146849 | || ||||| |||| | | || | || | || | || ||||| || | Sbjct 14220738 GTCTGGGCCTCGAGGATG--GCATACCACAGCTTTTGCGCCTTGAGCGTCTTGCGGCCCT 14220795 Query 146850 TTTATTC-TTTTCGTATTTCTCGTACAATATTTCAAAACTAG-AACCGTACTCGTCGAGG 146907 | || ||||| || |||||||| || |||| | ||||| ||| Sbjct 14220796 TGCCCTCACGCTCGTACTTTTCGTACAAAGCCTC-GAACTCGTCGCCGTAGCAGTCTGCT 14220854 Query 146908 AGGCCGGGATACTTTTTGGGACAGAACAGCGACCATTCTTTATTCTCCTTCACGCGTTCC 146967 ||||| || ||| ||||| || | |||| ||| || |||| || || || | | Sbjct 14220855 AGGCCAGGGCACTCGTTGGGGCACATGAGCGTCCAGTCGCCGTTCTTCTCAACCCGCTTC 14220914 Query 146968 ATAAACAAATCGGGAATCCAAAGGCCCAGCATCAAGTCGCGAGCCTTGGCGTCCTCGGAG 147027 || || | || || ||||| ||| |||| | | |||||| || | ||||| | Sbjct 14220915 ATGAATAGGTCTGGGATCCATAGGGCCAGGAAAAGGTCGCGGGCGCGGATCTCCTCCTTG 14220974 Query 147028 CCCATGTTGCGTCTCAAGTTGAGGACATCGTAAATTTCCGGATGCCAAGGCTCCACGTAT 147087 || ||| | || || ||||| ||| | | || | ||||| ||||||| || Sbjct 14220975 CCGTGGTTCTTGCGCAGGTCGAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAGATAG 14221034 Query 147088 GCGGCGAGTGCGCCTTTTCGC---TTACCGCCCTGATCGACGTGGCGCACCATGTTATTG 147144 ||| | ||||| ||| || || ||||| ||||||| || || |||| ||| Sbjct 14221035 ATGGCAAAGGCGCCGGGGCGCTTGTTGCCACCCTGGTCGACGTAACGGGCCGTGTTGTTG 14221094 Query 147145 AAGACTCGTAACATGGACACGAGGCCGCCGGAT------TTTGTGGTGCCGTTGTA---- 147194 || || |||| ||||| ||||| |||| |||| || ||| | || |||| Sbjct 14221095 AAAACACGTAGCATGGGCACGATGCCGTTGGATGTGCCGTTGGTGCCGGCGATGTAGGAG 14221154 Query 147195 ---TTGAGCGCTGACGCTTTGCACGCTCAGCCCGAGACCTCCGCCCAGATTCGAAATCAA 147251 || |||| || || || | | || |||| ||| ||| ||| || || |||| Sbjct 14221155 CCCGTG-GCGCGGATGCGGTGGATATTGAGGCCGATACCGCCGGCCATCTTGGAGATCAT 14221213 Query 147252 AGCGGACTCGTGCAAGGTCTTGTAGATGCCGTCGATGCTGTCTTCCTTGATGCATTGCAG 147311 || | | | ||| | |||||| || ||||||||||| ||||| ||| ||| Sbjct 14221214 GGCACAGGTTTTGAGGGTGTCGTAGATACCATCGATGCTGTCGTCCTTCATGTCGACCAG 14221273 Query 147312 GAAACACGAACACATTTGGGGACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTG 147371 ||| ||||| ||| |||| | |||||| || || || ||||| |||||| Sbjct 14221274 GAAGCACGACGACAGCTGGGCCTGGGGCGTGCCGGCGTTGAAGAGAGTGGGAGAGGCGTG 14221333 Query 147372 CGTGA---ACGTGCCCAGACTCATCAATTGATACGTTTCAATGGCGCTCATAACGTCATC 147428 |||| || ||| | || ||| | | ||||| || | ||| | | || || Sbjct 14221334 GGTGAAGTACTTGCTC-GA--CATGAGGTTGTACGTCTCGAGCACGCGCTCGATGTTGTC 14221390 Query 147429 GCCGTGAATGGCCAGGGCGACGCGCATGAGCATGTGCTGGGGTCGTTCCGCAATCACGTC 147488 ||| ||| | | ||||||||||||| |||||||||||| || || | ||| | | Sbjct 14221391 GCCCCAGATGCCGACAGCGACGCGCATGATCATGTGCTGGGGGCGCTCGACGATCTTGCC 14221450 Query 147489 ATTGACTTTTAATAGATATCCATTGGT-CAGAGTTTTGAAACCAAAGTACTTGTAGTCGT 147547 | || || | || || | | | | ||| || ||||| |||||||||| |||| | Sbjct 14221451 GTCGAGCTTGAGCAGGTA-CGAGCGCTCCAGGGTCTTGAAGCCAAAGTACTGATAGTTGA 14221509 Query 147548 AGTCCCTGT 147556 |||||| || Sbjct 14221510 AGTCCCGGT 14221518 >seq67 Length=2709248 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || || || ||||| ||| | || ||| || || ||||| || || ||| | Sbjct 458940 CTCCTTCTGGATGTTGTAGTCGGAAAGAGTCCGACCGTCCTCGAGCTGCTTCCCGGCGAA 458999 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTG 127041 ||||| |||||||| |||||||| || |||||||||||| || ||| ||||| | Sbjct 459000 GATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTCGACTTGACATT 459059 Query 127042 TTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 |||| |||||||| | ||| || || | ||| | || ||||| ||||| ||||| || Sbjct 459060 GTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATGGTCTTGCCCGTCAGGGTTTTGAC 459119 Query 127102 AAAAATCTGCAT 127113 ||||||||||| Sbjct 459120 GAAAATCTGCAT 459131 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | |||||| || | || ||| || || || |||||||| | Sbjct 458677 CCACCGCGCAGACGAAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGAC 458736 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || || ||||||| || |||||||| || || Sbjct 458737 AGAGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAAACGTTGCTGATCCGGGGGG 458796 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || ||||||||||| || ||| ||| | |||| |||| ||||| | |||||| Sbjct 458797 ATACCCTCCTTGTCTTGAATCTTCGACTTCACGTTG-TCGATCGTGTCTGATGACTCGAC 458855 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | || |||||||| || || || || || |||||||| Sbjct 458856 TTCCAGCGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 458903 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| ||||||||||| || ||||| || | || || || || || || || || Sbjct 459162 CGTCGACTCTTTTTGGATGTTGTAGTCCGAGAGGGTCCGGCCGTCCTCGAGTTGCTTGCC 459221 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 |||| |||| | |||||||| |||||||| || |||||||||||| ||| || ||| Sbjct 459222 AGCGAAGATGAGGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGACTT 459281 Query 127036 GA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCA 127091 || |||| |||| ||| || | | ||| || |||| ||| | || ||||| |||| Sbjct 459282 GACGTTG-TCGATGGTATCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCA 459337 Score = 89.7 bits (98), Expect = 5e-13 Identities = 161/234 (69%), Gaps = 1/234 (0%) Strand=Plus/Plus Query 126881 ACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAA 126940 |||| ||| || || | |||| ||| | || | || ||||| || ||||| ||||| Sbjct 458444 ACTG-TCCGCCACGCAGACGCAGCACTAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAG 458502 Query 126941 TCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCG 127000 || || || || ||| || ||||| || || ||| |||||| |||||||| || Sbjct 458503 TCCGACAAGGTACGGCCATCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCC 458562 Query 127001 GGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTC 127060 ||||| ||||||||||| ||| ||| || ||| | | || | || || | Sbjct 458563 GGAGGGATGCCCTCCTTATCCTGGATCTTGCTCTTTACGTTATCAATCGTATCGGATGAT 458622 Query 127061 TCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||||||||| || | ||||| || |||| || || || || ||||||||| Sbjct 458623 TCGACTTCGAGCGTGATGGTTTTTCCAGTCAAGGTCTTCACGAAGATCTGCATG 458676 >seq23 Length=7462253 Score = 111 bits (122), Expect = 1e-19 Identities = 162/228 (71%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||| | |||| ||| ||| || || || ||||| ||| | Sbjct 7209997 CCACCACGCAGACGCAGCACTAGGTGTAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAC 7209938 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || |||||||| || || |||||| |||||||| || || || Sbjct 7209937 AGCGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAAGATCAGGCGCTGCTGGTCAGGGGG- 7209879 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||||| | |||| ||||| | ||| || Sbjct 7209878 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGCTCGACTCCACC 7209819 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | || ||||| || || || || ||||| ||||||||| Sbjct 7209818 TCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCATG 7209771 >seq12 Length=9596913 Score = 104 bits (114), Expect = 2e-17 Identities = 329/501 (66%), Gaps = 17/501 (3%) Strand=Plus/Minus Query 47085 AAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACGTC-ACTCTGGCCGAACGTTT 47143 |||||||| ||||| |||||| ||| || | || ||| || | ||| || | Sbjct 6218742 AAGGCCGACTGGGCTTTGAAGTGGATTTCCGACAAGAA-GTCGACCTTTGCCTCGCGGCT 6218684 Query 47144 GATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTA 47203 || || || ||| ||| ||||| |||||||| || |||||| | || || | Sbjct 6218683 CATTGCCTTTGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTG 6218624 Query 47204 CATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGA 47263 |||| | || | ||||| ||||| || || ||||||||| ||||| | || Sbjct 6218623 GCTGAAGAAGCGCGGCCTGATGCCTGGCCTTACCTTCTCCAACGAGCTCATCTCTCGTGA 6218564 Query 47264 CGAAGGCCTGCACACCAACTTTGCCTG---TCTCTACTACAACACTA-GAGTCGATCAA- 47318 ||| || |||||||| |||||||||| ||||| || | ||| | || || | | Sbjct 6218563 CGAGGGTCTGCACACGGACTTTGCCTGCCTTCTCTTCTCCCACATGAAGAACCGGCCCAG 6218504 Query 47319 -AAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGA 47377 ||| | || | || || || || | | ||| || ||| || ||| || Sbjct 6218503 CAAGC---AAATG---ATCG--AG-GAGATCATCGTCGATGCTGTCAAGATCGAGCAAGA 6218453 Query 47378 GTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAA 47437 ||| | ||||||| ||||| | | | || |||||| || | | |||| | Sbjct 6218452 GTTCCTGACCGAGGCCCTGCCTTGTGCGCTGCTCGGCATGAACTCGAACCTCATGAAGCA 6218393 Query 47438 GTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCA 47497 ||||||||| || || || |||||||| || ||| || | || |||| | |||| Sbjct 6218392 GTACATCGAGTTCGTGGCAGACCGCCTCCTGGTTGCTCTCGGGAATGACAAGGTCTACCG 6218333 Query 47498 CACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTT 47557 | | || || ||||| || ||| | ||||| || || | |||||||||||||| || Sbjct 6218332 CGCATCCAACCCCTTCGACTTCATGGAGAACATCTCTCTGGGCGGCAAGACCAACTTCTT 6218273 Query 47558 CGAGAAGCGCGTCGGCGAATA 47578 ||| |||||||| ||||| || Sbjct 6218272 CGAAAAGCGCGTGGGCGAGTA 6218252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500324499200