Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017- 06-19] 80 sequences; 53,151,282 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1 129 5e-25 >seq1 Length=15654088 Score = 129 bits (142), Expect = 5e-25 Identities = 915/1453 (63%), Gaps = 46/1453 (3%) Strand=Plus/Minus Query 122890 TCGAGGAAAAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGC 122949 |||| | ||| ||| ||| || || || ||| |||||||||||||| | ||| | | Sbjct 14221455 TCGACGGCAAGATCGTCGAGCGCCCCCAGCACATGATCATGCGCGTCGCTGTCGGCAT-C 14221397 Query 122950 ACGGACG-CGACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTC 123008 || || | ||||||| || | ||| || ||| | | ||||| || | ||| Sbjct 14221396 TGGGGCGACAACATCGAGCGCGTGCTCGAGACGTACAACCTCATGTCGAGCAAGTACTTC 14221337 Query 123009 ACGCACGCGAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGT 123068 || ||||| ||||||| | ||| |||||||||| | | ||| |||| ||||| Sbjct 14221336 ACCCACGCCTCTCCCACTCTCTTCAACGCCGGCACGCCCCAGGCCCAGCTGTCGTCGTGC 14221277 Query 123069 TTTTTGCTCACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGC 123128 || || || | || || ||||||||| |||||||| || || | || Sbjct 14221276 TTCCTGGTCGACATGAAGGACGACAGCATCGATGGTATCTACGACACCCTCAAAACCTGT 14221217 Query 123129 GCGTTGATTTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGC 123188 || |||| ||||| | | |||||| || ||| | || | ||| | | | ||| | Sbjct 14221216 GCCATGATCTCCAAGATGGCCGGCGGTATCGGCCTCAATATCCACCGCATCCG-CGCCAC 14221158 Query 123189 GGAAGCC-GCATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGT 123247 || || |||| ||||| |||| | || ||| ||| ||||||| || || Sbjct 14221157 GGGCTCCTACATCGCCGGCACCAACGGCACATCCAACGGCATCGTGCCCATGCTACGTGT 14221098 Query 123248 TTACAATAACGCCGTGCGGCACGTCGACCAGGGCGG---CAAACGCAAAGGCGCGATGGC 123304 || ||| ||| | | || ||||||||||||| || ||| ||| ||||| | || Sbjct 14221097 TTTCAACAACACGGCCCGTTACGTCGACCAGGGTGGCAACAAGCGCCCCGGCGCCTTTGC 14221038 Query 123305 GATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGC---AA 123361 |||||||| || |||||||||| || |||| ||| || | | | ||| || Sbjct 14221037 CATCTATCTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCCTCGACCT---GCGCAAGAA 14220981 Query 123362 CATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTT 123421 | || ||| || | |||||||| | || || ||||| | || || | Sbjct 14220980 CCACGGCAAGGAGGAGATCCGCGCCCGCGACCTTTTCCTGGCCCTATGGATCCCAGACCT 14220921 Query 123422 GTTTATGCGACGCGT--AAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGT 123479 || ||| || || | |||| |||||| ||| |||||||||| ||| | ||| Sbjct 14220920 ATTCATGAAGCGGGTTGAGAAGA--ACGGCGACTGGACGCTCATGTGCCCCAACGAGTGC 14220863 Query 123480 CCCGGCTTGAGC-GACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCG 123538 || ||| | ||| ||| |||||| | |||| || | ||||||| | |||||||| Sbjct 14220862 CCTGGCCT-AGCAGACTGCTACGGCGACGAGTTCGAGGCTTTGTACGAAAAGTACGAGCG 14220804 Query 123539 CGAAGGCAAACAGGTTAGTCAG--GTTC-CGGCACGTGATTTGTTCAAATTTATTATCGA 123595 || |||| ||| | || | || ||| | | ||| | || |||| Sbjct 14220803 TGAGGGCA---AGGGCCGCAAGACGCTCAAGGCGCAAAAGCTGTGGTATGCCATCCTCGA 14220747 Query 123596 AACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAAC 123655 | || ||| || || | || | |||||| ||||||||| ||||||| | || | Sbjct 14220746 GGCCCAGACCGAGACTGGCAACCCCTTCATGCTGTACAAAGACCACTGCAACCGCAAGAG 14220687 Query 123656 CAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATA 123715 ||| |||| ||| |||| || || | ||| || ||| |||| || |||| || Sbjct 14220686 CAACCAGAAGAACCTGGGCACCATCCGCAGCTCTAACCTGTGCACCGAGATCGTCGAGTA 14220627 Query 123716 CAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCG-TGAATCGTTGCG 123774 | || ||||| | ||||| ||||| || |||| ||| || ||| || | | | Sbjct 14220626 C-TCGCGCCCGATGAGGTGGCTGTGTGCAACCTGGCGTCG-TTGGCGCTGCCGCAGTTTG 14220569 Query 123775 TCGA----AA--ACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAG 123828 |||| || | ||||| | | | |||| | ||| | | || | || | Sbjct 14220568 TCGACTACAACGAGGGCGCCTATGACTTCCGGAAGCTGCACGAGGTGACCCAGGTCGTCG 14220509 Query 123829 TAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGT 123888 | ||| | ||||| || ||||| || || | || || | |||| || ||| Sbjct 14220508 TTCGTAATCTTAACAAGATCATCGACGTCAACTACTACCCGGTCCAGGAGGCTCGTAACA 14220449 Query 123889 CTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAA 123948 || || ||| | || |||| | ||| | || || ||||||| || || || Sbjct 14220448 GCAACCTGCGCCACCGGCCCATCGGCCTAGGCGTGCAGGGTCTGGCCGATGCCTTCCTAG 14220389 Query 123949 TGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAA 124008 ||||||| |||| | ||| ||| || ||| || | ||| || || | Sbjct 14220388 CGCTGCGCCTGCCCTTCGAGTCTCCCGAGGCTCGCGAGCTCAACAAGCAGATCTTTGAGA 14220329 Query 124009 CAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACG 124068 | || || ||| ||| || || ||||| || ||| || ||| | ||| Sbjct 14220328 CCATCTACCACGCCGCCCTGACCGCCTCGTGCGAGCTGGCGCGCGAGCAGGGCACCTACT 14220269 Query 124069 AAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTA 124128 | |||| |||| || | | | || || ||||||||||||||||||| | | Sbjct 14220268 CGACATACGAGGGCTCGCCTGTGTCGCAGGGCATCCTGCAGTACGACATGTGGAACGTCA 14220209 Query 124129 CACCGACAAATTTGTGGGACT-GGAG-CGTTTTAAAACAA--CGCATATC--GACGCACG 124182 ||| | | | ||||||| |||| || | ||| || | ||| | ||||| Sbjct 14220208 AGCCGTCGGAGCTCTGGGACTGGGAGTCGCT------CAAGGCGGACATCAAGCAGCACG 14220155 Query 124183 GTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAG 124242 || |||| ||||||||| | |||||| |||||| || || | ||| | || ||| | | Sbjct 14220154 GTGTGCGCAACTCGCTGCTTGTGGCGCCCATGCCCACCGCCAGCACGTCGCAGATTCTGG 14220095 Query 124243 GAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCG 124302 | |||||||| | ||||||||| | ||| ||| | ||| ||| || ||| | |||| Sbjct 14220094 GCAACAACGAGTGCTTCGAGCCCTACACGTCCAACATCTACCAGCGTCGCGTGCTCGCCG 14220035 Query 124303 GCGATTTTCAAGT 124315 |||| || || || Sbjct 14220034 GCGAGTTCCAGGT 14220022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002747996800