Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017- 06-19] 80 sequences; 53,151,282 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1 208 9e-49 seq12 107 2e-18 >seq1 Length=15654088 Score = 208 bits (230), Expect = 9e-49 Identities = 1046/1646 (64%), Gaps = 34/1646 (2%) Strand=Plus/Plus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 || ||||||||||| ||||||||||| || |||||||| | | ||||| || | Sbjct 14219710 CGCAGGTAGTACATGCCCGTCTTGAGGCCTAGCTTCCAGCCGGCGAAGTGCATAGACGTT 14219769 Query 115618 AACTTGGAGAGTGTTGGACTTTC-CATGAAGAGGTTCATACTTTGGGATTGATCGATGAA 115676 | |||| | || ||| || | |||| || ||| | || ||||| |||||||| Sbjct 14219770 ATCTTGCCCA-TGGTGGGCTCGCGCATGTGGATGTTGAGCGACTGCGATTGGTCGATGAA 14219828 Query 115677 GCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCT 115736 | || || || |||||||| | | || | | ||| ||||| || || | Sbjct 14219829 GGCGCCGCGGTCAGCCGCCATCTGGACGACGGTGCGCTGCGAGATCTCCCAGACCGTCTT 14219888 Query 115737 GTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTT 115796 ||| ||| ||| |||| || ||||| |||| || ||||| ||||| || | Sbjct 14219889 GTACAGGCGCTTGGTATCCTCGGGGATGCTGGCGATGTTCTGGATGGAGCCGCCCTCGGC 14219948 Query 115797 GACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAG 115856 || ||| | | |||||| | | ||||| | |||| || || |||| || ||| Sbjct 14219949 GATGATGCGGTTCTTCATGTTGTCGGACCACAAGCCAAGCTCGACCAGGTCCTTCAGGAG 14220008 Query 115857 GTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGT 115916 ||||| || ||||| || ||||| ||| | | | |||||||||| ||| Sbjct 14220009 CCATGGGTTGACGACCTGGAACTCGCCGGCGAGCACGCGACGCTGGTAGATGTTGGACGT 14220068 Query 115917 GTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGG 115976 ||| ||||| |||||||| ||||| |||| || || | ||| ||| ||||||||||| Sbjct 14220069 GTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGCTGGCGGTGGGCATGGG 14220128 Query 115977 TGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCA 116036 |||| || || |||||| | ||| | | | ||| ||||||| | ||||| Sbjct 14220129 CGCCACAAGCAGCGAGTTGCGCACACCGTGCTGCTTGATGTCCGCCTTGAGCGACTCCCA 14220188 Query 116037 GTCGTAGTTGAGCT---TTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGA 116093 ||| | ||||| | || | | |||||| || |||| ||||| || || || Sbjct 14220189 GTCCCA---GAGCTCCGACGGCTTGACGTTCCACATGTCGTACTGCAGGATGCCCTGCGA 14220245 Query 116094 CGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGC 116153 | | ||||| ||||| ||||| || | ||||| | ||||| ||| | || Sbjct 14220246 CACAGGCGAGCCCTCGTATGTCGAGTAGGTGCCCTGCTCGCGCGCCAGCTCGCACGAGGC 14220305 Query 116154 CTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTC 116213 ||||| ||||| || || |||||||| || | || | | |||||| Sbjct 14220306 GGTCAGGGCGGCGTGGTAGATGGTCTCAAAGATCTGCTTGTTGAGCTCGCGAGCCTCGGG 14220365 Query 116214 GGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCC 116273 || || || | || || | | || |||| || ||||| || || || ||||| Sbjct 14220366 AGACTCGAAGGGCAGGCGCAGCGCTAGGAAGGCATCGGCCAGACCCTGCACGCCTAGGCC 14220425 Query 116274 AATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATC 116333 || || || || | || || || ||||| || || || || | || || Sbjct 14220426 GATGGGCCGGTGGCGCAGGTTGCTGTTACGAGCCTCCTGGACCGGGTAGTAGTTGACGTC 14220485 Query 116334 GATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATC 116393 ||| | | | || ||||| ||| |||| || | || || ||||| | | || Sbjct 14220486 GATGATCTTGTTAAGATTACGAACGACGACCTGGGTCACCTCGTGCAGCTTCCGGAAGTC 14220545 Query 116394 AAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACAC 116453 | | || | | | |||| ||| || || || | |||||||| || ||||| Sbjct 14220546 ATAGGCGCCCTCGTTGTAGTCGACAAACTGCGGCAGCGCCAACGACGCCAGGTTGCACAC 14220605 Query 116454 AGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAAT 116513 || |||||| | | |||||| | || || || |||| || || || || Sbjct 14220606 AGCCACCTCATCGGGCGC-GAGTACTCGACGATCTCGGTGCACAGGTTAGAGCTGCGGAT 14220664 Query 116514 GGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGG 116573 |||||||| |||||| || || ||| ||| || || ||||| ||||| | || Sbjct 14220665 GGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCTTTGTACAGCATGAAGGG 14220724 Query 116574 CGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAG 116632 | || ||||| || |||| || ||| || || | ||| | | | ||| || | || Sbjct 14220725 GTTGCCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCACAGCTTTTGCGCCTTG---AG 14220781 Query 116633 TGGCGTTGGCTCGCCCCT---CCTC---CTCGTACTTTGTGTAGAGGGCCTCAAACTCTT 116686 | | ||| || |||| |||| |||||||||| ||| | ||||| ||||| | Sbjct 14220782 CGTC-TTG---CGGCCCTTGCCCTCACGCTCGTACTTTTCGTACAAAGCCTCGAACTCGT 14220837 Query 116687 CACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCA 116745 | || ||| |||| || || || || | || || | ||| | ||| | || Sbjct 14220838 C-GCCGTAGCAGTCTGCTAGGCCAGGGCACTCGTTGGGGCACATGAGCGTCCAGTCGCCG 14220896 Query 116746 CCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGA 116805 || |||||||||||||||||| |||||||||||||| || ||| ||| || || || Sbjct 14220897 TTCTTCTCAACCCGCTTCATGAATAGGTCTGGGATCCATAGGGCCAGGAAAAGGTCGCGG 14220956 Query 116806 CAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCG 116865 ||| || || | || || || |||| || | || || | | || ||| Sbjct 14220957 GCGCGGATCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCGAGGAACTCGAACACGTCGGCG 14221016 Query 116866 TGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGACCAGCCTGGTTTACA 116922 |||||||| ||||| || | || | | || ||| ||| |||||| || Sbjct 14221017 TGCCACGGCTCCAGATAGATGGCAAAGGCGCCGGGGCGCTTGTTGCCACCCTGGTCGACG 14221076 Query 116923 TACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTT 116982 || | ||||| ||| || || || ||||| || | ||| || | ||| ||| || Sbjct 14221077 TAACGGGCCGTGTTGTTGAAAACACGTAGCATGGGCACGATGCCGTTGGATGTGCCGTTG 14221136 Query 116983 GT-CCCCCGA-ATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCC 117040 || || ||| || ||| | |||| | || |||||| | | || ||||| | Sbjct 14221137 GTGCCGGCGATGTAGGAGCC--CGTGGCGCGGATGCGGTGGATATTGAGGCCGATACCGC 14221194 Query 117041 CTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGT 117100 | ||| ||| ||||| || || |||| || ||||||| |||||||| || Sbjct 14221195 CGGCCATCTTGGAGATCATGGCACAGGTTTTGAGGGTGTCGTAGATACCATCGATGCTGT 14221254 Query 117101 CACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCT-TGGTGTACCAGCGTTG 117159 | |||| | ||| |||||||| ||||| || ||||| || || || |||||| Sbjct 14221255 CGTCCTTCATGTCGACCAGGAAGCACGACGACAGCTG-GGCCTGGGGCGTGCCGGCGTTG 14221313 Query 117160 AAGAGGGTTGGTGTCGCGTGGATGAA 117185 ||||| || || | |||||| |||| Sbjct 14221314 AAGAGAGTGGGAGAGGCGTGGGTGAA 14221339 Score = 82.4 bits (90), Expect = 9e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 177732 AGATGTTCGTCAACTTGGCACCGTAGCCATTGCGTCCACCAACAATTCTCTTCTTGTTGT 177791 ||||||| || | |||||||||||| || ||||| |||||||| | || || |||| Sbjct 7239648 AGATGTTGGTAAGCTTGGCACCGTAACCGTTGCGGCCACCAACGGTCTTCAGCTCCTTGT 7239707 Query 177792 CATCGTAGTTTGTACTCGTGAGAAGGTGACCAAAGGTAAGTTCTGGATTCCAAATACCCT 177851 ||||||| || | || ||||| |||||||| || | ||||| || | | | || Sbjct 7239708 CATCGTAATTGGAACCAGTGAGGAGGTGACCGAAAATCAGTTCGGGGATGTAGACCTTCT 7239767 Query 177852 CCTTTTCGTGCAT 177864 |||| |||||||| Sbjct 7239768 CCTTCTCGTGCAT 7239780 >seq12 Length=9596913 Score = 107 bits (118), Expect = 2e-18 Identities = 159/224 (71%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| |||||||||||||| |||||||| || || |||||| || || Sbjct 6218540 GCAAAGTCCGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTAAGGCCA 6218599 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| || || |||||||||| |||||| || | ||| | || ||||||||| Sbjct 6218600 GGCATCAGGCCGCGCTTCTTCAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATA 6218659 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATC---A 127696 ||||| || || || |||| || ||| |||||||| ||||| | || | Sbjct 6218660 CCCTCAACGGCGGCAAAGGCAATGAGCCGCGAGGCAAAGG---TCGACTTCTTGTCGGAA 6218716 Query 127697 AACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGAC 127740 | |||||||| ||||| | ||||| || ||| |||||||| Sbjct 6218717 ATCCACTTCAAAGCCCAGTCGGCCTTCTTACGGATGCATGGGAC 6218760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506586492800