Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017- 06-19] 80 sequences; 53,151,282 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1 230 4e-55 >seq1 Length=15654088 Score = 230 bits (254), Expect = 4e-55 Identities = 465/680 (68%), Gaps = 10/680 (1%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCC 203898 || ||| || |||||||| || | | |||||| | | | ||| ||||||||||| Sbjct 14219667 CTGGTCGACGGTGAACTGGATAGGCTGGGCGGCAGCTTGGGTGCGCAGGTAGTACATGCC 14219726 Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGG 203958 ||||| ||||| || ||| ||| | |||||| || | | |||| || | |||| Sbjct 14219727 CGTCTTGAGGCCTAGCTTCCAGCCGGCGAAGTGCATAGACGTTATCTTGCCCATGGTGGG 14219786 Query 203959 GTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGG 204017 ||| |||||| ||||| || ||||| |||||||||| |||||||| || || || | Sbjct 14219787 CTCGCGCATGTGGATGTTGAGCGACTGCGATTGGTCGATG-AAGGCGCCGCGGTCAGCCG 14219845 Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGT 204077 |||| | || | ||| |||||| |||||||| ||||||||| ||| | |||| | Sbjct 14219846 CCATCTGGACGACGGTGCGCTGCGAGATCTCCCAGACCGTCTTGTACAGGCGCTTGGTAT 14219905 Query 204078 GTTGAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCCTC 204136 | || | || | | || || ||| |||||| ||||| || | | || || Sbjct 14219906 CCTCGGGGA-TGCTGGCGATGTTCTGGATGGAGCCGCCCTCGGCGATGATGCGGTTCTTC 14219964 Query 204137 GTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATC 204196 | | || ||||| ||| | | || ||| ||| || || ||||||| || | Sbjct 14219965 ATGTTGTCGGACCACAAGCCAAGCTCGACCAGGTCCTTCAGGAGCCATGGGTTGACGACC 14220024 Query 204197 TGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCC 204256 || || || |||| ||||| | || | | | |||| ||| | || ||||| | Sbjct 14220025 TGGAACTCGCCGGCGAGCACGCGACGCTGGTAGATGTTGGACGTGTAGGGCTCGAAGCAC 14220084 Query 204257 TCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAG 204316 ||||||||||| | |||||| | |||||||| ||||||||||| |||| ||||| ||| Sbjct 14220085 TCGTTGTTGCCCAGAATCTGCGACGTGCTGGCGGTGGGCATGGGCGCCACAAGCAGCGAG 14220144 Query 204317 TTGCGCACACCGT-ATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACT 204375 ||||||||||||| | ||| | || ||| || || |||||| || || | Sbjct 14220145 TTGCGCACACCGTGCTGCTTGATGTCCGC-CTTGAGCGACTCCCAGTC--CCAGAGCTCC 14220201 Query 204376 G--GGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTG 204433 | || || ||| |||||||||| |||| | |||||| || || || ||||| | Sbjct 14220202 GACGGCTTGACGTTCCACATGTCGTACTGCAGGATGCCCTGCGACACAGGCGAGCCCTCG 14220261 Query 204434 TACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAG 204493 || |||| || | | ||| ||||||| ||||||||||| || |||| | | Sbjct 14220262 TATGTCGAGTAGGTGCCCTGCTCGCGCGCCAGCTCGCACGAGGCGGTCAGGGCGGCGTGG 14220321 Query 204494 TACATGGTCTCAAAGATCTG 204513 || ||||||||||||||||| Sbjct 14220322 TAGATGGTCTCAAAGATCTG 14220341 Score = 158 bits (174), Expect = 2e-33 Identities = 590/910 (65%), Gaps = 14/910 (2%) Strand=Plus/Plus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 ||| |||||||||||||||| |||| || | |||| | || |||||| Sbjct 14220629 CTCGACGATCTCGGTGCACAGGTTAGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCT 14220688 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA-TC 205001 ||||||||| ||| ||| ||||||| |||||| || | || |||| |||| | || Sbjct 14220689 CTTGCGGTTGCAGTGGTCTTTGTACAGCATGAAGGGGTTGCCAGTCTCGGTCTGGGCCTC 14220748 Query 205002 GCAGAATGTGGGTCCACAATTCGCGAGCCTCCACTTGCTTCACGTACATCCCTTGAGACT 205061 | || ||| ||||| | | |||| | ||| | | | || | | || Sbjct 14220749 G-AGGATGGCATACCACAGCTTTTGCGCCTTGAGCGTCTTGCGGCCCTTGCCCTCACGCT 14220807 Query 205062 CGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACATT 205121 |||| ||| ||||| ||| | || || ||||| ||| || || || || | Sbjct 14220808 CGTACTTTTCGTACAAAGCCTCGAACTCGTCGCCGTAGCAGTCTGCTAGGCCAGGGCACT 14220867 Query 205122 TTTTGGGACACATCAGAGACCACAT-CTGATCGTCTTTCACCCTCTCCATAAACAGGTCG 205180 ||||| ||||| || | ||| | | || ||| |||| || ||| || ||||| Sbjct 14220868 CGTTGGGGCACATGAGCGTCCAGTCGCCGTTCTTCTCA-ACCCGCTTCATGAATAGGTCT 14220926 Query 205181 CTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTT 205240 |||||| ||| | || || || ||||| | || | || | || ||||||| Sbjct 14220927 GGGATCCATAGGGCCAGGAAAAGGTCGCGGGCGCGGATCTCCTCCTTGCCGTGGTTCTTG 14220986 Query 205241 TTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGC 205299 || ||| || || || | | |||||||||||||||||| | | | ||| | || Sbjct 14220987 CGCAGGTCGAGG-AACTCGAACACGTCGGCGTGCCACGGCTCCAGATAGATGGCAAAGGC 14221045 Query 205300 GCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAG 205359 ||| || | |||||| ||||||||||| || || | | | ||||||||| || || Sbjct 14221046 GCCGGGGCGCTTGTTGCCACCCTGGTCGACGTAACGGGCCGTGTTGTTGAAAACACGTAG 14221105 Query 205360 CATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCCT 205419 ||| ||||| | ||||||| || ||||| |||| | |||| ||||| || | Sbjct 14221106 CATGGGCACGATGCCGTTGGATGTGCCGTTGGTGCCGGCGATGTAGGAGCCCGTGGCGCG 14221165 Query 205420 CA--CGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCACTCT 205477 | || |||| || | ||| || ||||| | ||||| |||| ||| || | Sbjct 14221166 GATGCGGTGGATATTG--AGGCCGATACCGCCGGCCATCTTGGAGATCATGGCACAGGTT 14221223 Query 205478 TGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTC-ACCAGATAGCACGA 205536 | || ||| |||||| || ||||| |||||| || |||| ||||| ||||||| Sbjct 14221224 TTGAGGGTGTCGTAGATACCATCGATGCTGTCGTCCTTCA-TGTCGACCAGGAAGCACGA 14221282 Query 205537 AGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAGCG 205596 | ||||| ||| | ||||| |||| |||||| ||||| ||||||| ||||| Sbjct 14221283 CGACAGCTGGGCCTGGGGCGTGCCGGCGTTGAAGAGAGTGGGAGAGGCGTGGGTGAAGTA 14221342 Query 205597 CTT-CTCGCTCAAACACCTGTAGGTCTCCAGCACGCTCTCCAGATCGAAGCCGTGAATAC 205655 ||| |||| || |||| ||||| ||||||| ||| | | | ||| || | Sbjct 14221343 CTTGCTCG-ACATGAGGTTGTACGTCTCGAGCACGCGCTCGATGTTGTCGCCCCAGATGC 14221401 Query 205656 CTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCACCCTCTCGTTCACCTTGA 205715 | | |||| | ||||| | ||| || || | ||| | | | | ||| | ||||| Sbjct 14221402 CGACAGCGACGCGCATGATCATGTGCTGGGGGCGCTCGACGATCTTGCCGTCGAGCTTGA 14221461 Query 205716 GCAGATAGGCTCTCTCTAGGGTGCGGATGGCAAAAAAGTTGAAGGTGTAGTCCCTAGAAT 205775 |||| || | | ||| ||||| || | |||| | | || || |||||| || Sbjct 14221462 GCAGGTACGAGCGCTCCAGGGTCTTGAAGCCAAAGTACTGATAGTTGAAGTCCCGGTCAT 14221521 Query 205776 AGTCGATGGC 205785 || ||||||| Sbjct 14221522 AGACGATGGC 14221531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154404844800