Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017- 06-19] 80 sequences; 53,151,282 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq12 143 3e-29 seq23 122 9e-23 seq67 120 3e-22 seq1 96.9 3e-15 >seq12 Length=9596913 Score = 143 bits (158), Expect = 3e-29 Identities = 350/517 (68%), Gaps = 14/517 (3%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| || ||| ||| || || |||||||| || || || || || || || || | Sbjct 6218233 CATGACACCAGCTTTCTGGTACTCGCCCACGCGCTTTTCGAAGAAGTTGGTCTTGCCGCC 6218292 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGG---TGCC 132707 || || ||| | ||| || || |||||||||| || | |||| |||| | || Sbjct 6218293 CAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTGGATGCGCGGTAGACCTTGTCATTCCC 6218352 Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGC 132766 || || | || || || | ||| ||||||||||||||||| ||| |||| | |||| Sbjct 6218353 GAG-AG--CAACCAGGAGGCGGTCTGCCACGAACTCGATGTACTGCTTCATGAGGTTCG- 6218408 Query 132767 AATTAAGTCCCAGCAGACGCAC-CGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCG 132825 | || | || ||||| ||||| ||||| || ||||| || || ||||||||| | Sbjct 6218409 AGTTCATGCCGAGCAG-CGCACAAGGCAGGGCCTCGGTCAGGAACTCTTGCTCGATCTTG 6218467 Query 132826 ACCGCGTCGGTGACGATTTCC-CTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTT 132884 || || ||| || ||| ||| | | | | | ||| ||||| | | || || Sbjct 6218468 ACAGCATCGACGATGATCTCCTCGATCATTTG-CTTGCTGGGCCGGTTCTTCATGTGGGA 6218526 Query 132885 GAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCT 132944 ||| | | ||| |||||||| |||| |||||||| | || ||||| |||||| Sbjct 6218527 GAAGAGAAGGCAGGCAAAGTCCGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGA 6218586 Query 132945 GAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCC 133004 ||| || | ||| ||||| |||||||| || || ||||| || |||| ||| || || Sbjct 6218587 GAAGGTAAGGCCAGGCATCAGGCCGCGCTTCTTCAGCCAGAAGATGGAGGCAAAGGCACC 6218646 Query 133005 CGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGT-GGCTT 133063 ||||||| ||||| ||||| || || || | || ||| | | || || | ||| Sbjct 6218647 GCTGAAGAAGATACCCTCAACGGCGGCAAAGGCAATGAGCCGCGAGGCAAAGGTCGACTT 6218706 Query 133064 CTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100 | ||| || ||||| || ||||| |||||||| Sbjct 6218707 C-TTGTCGGAAATCCACTTCAAAGCCCAGTCGGCCTT 6218742 Score = 141 bits (156), Expect = 9e-29 Identities = 198/277 (71%), Gaps = 12/277 (4%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 |||||||||||| ||| ||| || | |||||||| | ||||||||| ||| ||||| Sbjct 6218880 GTAGGTGTCGATCAGGAGCGAGTAAGTCTCCGAGTGGATGTTCTCCATCATGATCTGAAA 6218939 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 || || ||||| || ||||| ||||| || || ||| ||||| ||||| || Sbjct 6218940 CCCATAGAAGCAACGTGCCTCAGGGACCTGGACCTCGCCGCTGAAGCGCTCCACCAGGTT 6218999 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 |||||||||||||| | ||| || ||||| || | |||| |||||| | Sbjct 6219000 CTCGTTGACGATGCCAT-------GGCAAAGAAGGCGAGGATGTGCGAGATGAAGTACTT 6219052 Query 133347 CTCGTTGTCGTTCAAGC----GCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCT 133402 ||| | |||||| |||| | ||||||| | ||||||||||| ||| | ||||| Sbjct 6219053 CTCATCGTCGTT-AAGCTTGTTGTTCCAGTCGTGGAGGTCCTTGGACAAGTCGATCTCCT 6219111 Query 133403 CGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | | ||||| ||||| ||||| || || |||||||| Sbjct 6219112 CAGCTGTCCAGAACGAGGCCTCAGCCTTCTTGTACAT 6219148 >seq23 Length=7462253 Score = 122 bits (134), Expect = 9e-23 Identities = 166/228 (73%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||||||||| || |||||| | || || ||| | | | Sbjct 7209772 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGAGC 7209831 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || || |||| ||||| ||||| || ||| | ||||| Sbjct 7209832 GACACGATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCC-CTGACCAG 7209890 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||||||||||||||||| || | ||||| || |||||||||| Sbjct 7209891 CAGCGCCTGATCTTTGCGGGCAAACAGCTGGAGGATGGCCGCACGCTGTCCGACTACAAC 7209950 Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| ||| ||||| || | ||||||||| || | || || Sbjct 7209951 ATCCAGAAGGAGAGC-ACGCTACACCTAGTGCTGCGTCTGCGTGGTGG 7209997 >seq67 Length=2709248 Score = 120 bits (132), Expect = 3e-22 Identities = 136/180 (76%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 |||||||| ||||||||| |||| || ||| | |||| | | | | |||| | || Sbjct 459335 ACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTCCGATACCATCGACAACG-TCAAGTC 459277 Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386 || |||| ||||| |||||||| || ||||||| ||||| ||||| | ||| ||||| Sbjct 459276 CAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGCCTCATCTTCGCTGGCAA 459217 Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 || || || |||| || |||||| ||||||||||||||||| || |||||||||| Sbjct 459216 GCAACTCGAGGACGGCCGGACCCTCTCGGACTACAACATCCAAAAAGAGTCGACGCTGCA 459157 Score = 114 bits (126), Expect = 1e-20 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || || ||||||||||| |||| ||||| | || Sbjct 458675 ATGCAGATCTTCGTGAAGACCTTGACTGGAAAAACCATCACGCTCGAAGTCGAATCATCC 458616 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | || |||| |||||| || |||| || || ||||| || || | |||| Sbjct 458615 GATACGATTGATAACG--TAAAGAGCAAGATCCAGGATAAGGAGGGCATCCCTCCGGACC 458558 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||||||||| |||||||| || | || ||| | ||||||| Sbjct 458557 AGCAGCGCCTGATCTTCGCGGGCAAGCAGCTGGAGGATGGCCGTACCTTGTCGGACTACA 458498 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||| || ||||| |||| || || | ||||||||| || | ||||| Sbjct 458497 ACATTCAGAAGGAGTCGACTCTCCACCTAGTGCTGCGTCTGCGTGGCGG 458449 Score = 107 bits (118), Expect = 2e-18 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || |||||||| ||||| |||||||| | || |||||| | | Sbjct 458903 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACGCTGGAAGTCGAGTCATCA 458844 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || || || | ||||| ||||| || ||| | || || Sbjct 458843 GACACGATCGACAACG-TGAAGTCGAAGATTCAAGACAAGGAGGGTATCCCCCCGGATCA 458785 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || | || | |||||||| |||||||| |||| ||||| || || ||||| Sbjct 458784 GCAACGTTTGATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGCACTCTGTCGGATTACAA 458725 Query 38423 CATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| ||| || || || |||||||| ||| || | || ||| Sbjct 458724 CATCCAGAAGGAGAGC-ACCCTCCACTTGGTGCTTCGTCTGCGCGGTGGC 458676 Score = 102 bits (112), Expect = 8e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| || |||||||| ||||||||| | || || ||| | | Sbjct 459131 ATGCAGATTTTCGTCAAAACCCTGACGGGCAAGACCATCACCTTGGAGGTGGAGTCTTCG 459072 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || || | ||||| ||||| || || ||||||| Sbjct 459071 GACACCATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAG 459012 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| || || ||||| || |||| || || || |||||||||| Sbjct 459011 CAGCGCCTGATCTTCGCCGGGAAGCAGCTCGAGGACGGTCGGACTCTTTCCGACTACAAC 458952 Query 38424 ATCCAAAAGGA 38434 ||||| ||||| Sbjct 458951 ATCCAGAAGGA 458941 >seq1 Length=15654088 Score = 96.9 bits (106), Expect = 3e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || || ||||| |||||||| | || |||||| || | |||| | Sbjct 11956502 TTCGTGAAGACCCTTACTGGCAAGACCATCACTCTGGAGGTCGAGTCCTCGGACACGATC 11956443 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| || || ||||||| ||||| ||| Sbjct 11956442 GACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGTCTC 11956383 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 |||| ||| ||||| ||||| || || | || || || ||||||||||||||| ||| Sbjct 11956382 ATTTTCGCTGGCAAGCAGCTTGAGGATGGCCGGACTCTGTCCGACTACAACATCCAGAAG 11956323 Query 38433 G 38433 | Sbjct 11956322 G 11956322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172299827200