Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017-
06-19] 80 sequences; 53,151,282 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq12 143 3e-29
seq23 122 9e-23
seq67 120 3e-22
seq1 96.9 3e-15
>seq12
Length=9596913
Score = 143 bits (158), Expect = 3e-29
Identities = 350/517 (68%), Gaps = 14/517 (3%)
Strand=Plus/Plus
Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650
||| || ||| ||| || || |||||||| || || || || || || || || |
Sbjct 6218233 CATGACACCAGCTTTCTGGTACTCGCCCACGCGCTTTTCGAAGAAGTTGGTCTTGCCGCC 6218292
Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGG---TGCC 132707
|| || ||| | ||| || || |||||||||| || | |||| |||| | ||
Sbjct 6218293 CAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTGGATGCGCGGTAGACCTTGTCATTCCC 6218352
Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGC 132766
|| || | || || || | ||| ||||||||||||||||| ||| |||| | ||||
Sbjct 6218353 GAG-AG--CAACCAGGAGGCGGTCTGCCACGAACTCGATGTACTGCTTCATGAGGTTCG- 6218408
Query 132767 AATTAAGTCCCAGCAGACGCAC-CGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCG 132825
| || | || ||||| ||||| ||||| || ||||| || || ||||||||| |
Sbjct 6218409 AGTTCATGCCGAGCAG-CGCACAAGGCAGGGCCTCGGTCAGGAACTCTTGCTCGATCTTG 6218467
Query 132826 ACCGCGTCGGTGACGATTTCC-CTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTT 132884
|| || ||| || ||| ||| | | | | | ||| ||||| | | || ||
Sbjct 6218468 ACAGCATCGACGATGATCTCCTCGATCATTTG-CTTGCTGGGCCGGTTCTTCATGTGGGA 6218526
Query 132885 GAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCT 132944
||| | | ||| |||||||| |||| |||||||| | || ||||| ||||||
Sbjct 6218527 GAAGAGAAGGCAGGCAAAGTCCGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGA 6218586
Query 132945 GAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCC 133004
||| || | ||| ||||| |||||||| || || ||||| || |||| ||| || ||
Sbjct 6218587 GAAGGTAAGGCCAGGCATCAGGCCGCGCTTCTTCAGCCAGAAGATGGAGGCAAAGGCACC 6218646
Query 133005 CGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGT-GGCTT 133063
||||||| ||||| ||||| || || || | || ||| | | || || | |||
Sbjct 6218647 GCTGAAGAAGATACCCTCAACGGCGGCAAAGGCAATGAGCCGCGAGGCAAAGGTCGACTT 6218706
Query 133064 CTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100
| ||| || ||||| || ||||| ||||||||
Sbjct 6218707 C-TTGTCGGAAATCCACTTCAAAGCCCAGTCGGCCTT 6218742
Score = 141 bits (156), Expect = 9e-29
Identities = 198/277 (71%), Gaps = 12/277 (4%)
Strand=Plus/Plus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
|||||||||||| ||| ||| || | |||||||| | ||||||||| ||| |||||
Sbjct 6218880 GTAGGTGTCGATCAGGAGCGAGTAAGTCTCCGAGTGGATGTTCTCCATCATGATCTGAAA 6218939
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286
|| || ||||| || ||||| ||||| || || ||| ||||| ||||| ||
Sbjct 6218940 CCCATAGAAGCAACGTGCCTCAGGGACCTGGACCTCGCCGCTGAAGCGCTCCACCAGGTT 6218999
Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346
|||||||||||||| | ||| || ||||| || | |||| |||||| |
Sbjct 6219000 CTCGTTGACGATGCCAT-------GGCAAAGAAGGCGAGGATGTGCGAGATGAAGTACTT 6219052
Query 133347 CTCGTTGTCGTTCAAGC----GCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCT 133402
||| | |||||| |||| | ||||||| | ||||||||||| ||| | |||||
Sbjct 6219053 CTCATCGTCGTT-AAGCTTGTTGTTCCAGTCGTGGAGGTCCTTGGACAAGTCGATCTCCT 6219111
Query 133403 CGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
| | ||||| ||||| ||||| || || ||||||||
Sbjct 6219112 CAGCTGTCCAGAACGAGGCCTCAGCCTTCTTGTACAT 6219148
>seq23
Length=7462253
Score = 122 bits (134), Expect = 9e-23
Identities = 166/228 (73%), Gaps = 3/228 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || ||||||||||| || |||||| | || || ||| | | |
Sbjct 7209772 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGAGC 7209831
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | || || |||| ||||| ||||| || ||| | |||||
Sbjct 7209832 GACACGATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCC-CTGACCAG 7209890
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | ||||||||||||||||| || | ||||| || ||||||||||
Sbjct 7209891 CAGCGCCTGATCTTTGCGGGCAAACAGCTGGAGGATGGCCGCACGCTGTCCGACTACAAC 7209950
Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||| ||||| ||| ||||| || | ||||||||| || | || ||
Sbjct 7209951 ATCCAGAAGGAGAGC-ACGCTACACCTAGTGCTGCGTCTGCGTGGTGG 7209997
>seq67
Length=2709248
Score = 120 bits (132), Expect = 3e-22
Identities = 136/180 (76%), Gaps = 2/180 (1%)
Strand=Plus/Minus
Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326
|||||||| ||||||||| |||| || ||| | |||| | | | | |||| | ||
Sbjct 459335 ACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTCCGATACCATCGACAACG-TCAAGTC 459277
Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386
|| |||| ||||| |||||||| || ||||||| ||||| ||||| | ||| |||||
Sbjct 459276 CAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGCCTCATCTTCGCTGGCAA 459217
Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446
|| || || |||| || |||||| ||||||||||||||||| || ||||||||||
Sbjct 459216 GCAACTCGAGGACGGCCGGACCCTCTCGGACTACAACATCCAAAAAGAGTCGACGCTGCA 459157
Score = 114 bits (126), Expect = 1e-20
Identities = 165/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || | || || ||||||||||| |||| ||||| | ||
Sbjct 458675 ATGCAGATCTTCGTGAAGACCTTGACTGGAAAAACCATCACGCTCGAAGTCGAATCATCC 458616
Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|| | | || |||| |||||| || |||| || || ||||| || || | ||||
Sbjct 458615 GATACGATTGATAACG--TAAAGAGCAAGATCCAGGATAAGGAGGGCATCCCTCCGGACC 458558
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| ||||| || || | ||||||||| |||||||| || | || ||| | |||||||
Sbjct 458557 AGCAGCGCCTGATCTTCGCGGGCAAGCAGCTGGAGGATGGCCGTACCTTGTCGGACTACA 458498
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||| || ||||| |||| || || | ||||||||| || | |||||
Sbjct 458497 ACATTCAGAAGGAGTCGACTCTCCACCTAGTGCTGCGTCTGCGTGGCGG 458449
Score = 107 bits (118), Expect = 2e-18
Identities = 165/230 (72%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || |||||||| ||||| |||||||| | || |||||| | |
Sbjct 458903 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACGCTGGAAGTCGAGTCATCA 458844
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | |||| | || || || | ||||| ||||| || ||| | || ||
Sbjct 458843 GACACGATCGACAACG-TGAAGTCGAAGATTCAAGACAAGGAGGGTATCCCCCCGGATCA 458785
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|| || | || | |||||||| |||||||| |||| ||||| || || |||||
Sbjct 458784 GCAACGTTTGATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGCACTCTGTCGGATTACAA 458725
Query 38423 CATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|||||| ||||| ||| || || || |||||||| ||| || | || |||
Sbjct 458724 CATCCAGAAGGAGAGC-ACCCTCCACTTGGTGCTTCGTCTGCGCGGTGGC 458676
Score = 102 bits (112), Expect = 8e-17
Identities = 137/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| ||||| || |||||||| ||||||||| | || || ||| | |
Sbjct 459131 ATGCAGATTTTCGTCAAAACCCTGACGGGCAAGACCATCACCTTGGAGGTGGAGTCTTCG 459072
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || || || | ||||| ||||| || || |||||||
Sbjct 459071 GACACCATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAG 459012
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | ||| || || ||||| || |||| || || || ||||||||||
Sbjct 459011 CAGCGCCTGATCTTCGCCGGGAAGCAGCTCGAGGACGGTCGGACTCTTTCCGACTACAAC 458952
Query 38424 ATCCAAAAGGA 38434
||||| |||||
Sbjct 458951 ATCCAGAAGGA 458941
>seq1
Length=15654088
Score = 96.9 bits (106), Expect = 3e-15
Identities = 130/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || || ||||| |||||||| | || |||||| || | |||| |
Sbjct 11956502 TTCGTGAAGACCCTTACTGGCAAGACCATCACTCTGGAGGTCGAGTCCTCGGACACGATC 11956443
Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| | | || || |||| ||||| ||||| || || ||||||| ||||| |||
Sbjct 11956442 GACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGTCTC 11956383
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|||| ||| ||||| ||||| || || | || || || ||||||||||||||| |||
Sbjct 11956382 ATTTTCGCTGGCAAGCAGCTTGAGGATGGCCGGACTCTGTCCGACTACAACATCCAGAAG 11956323
Query 38433 G 38433
|
Sbjct 11956322 G 11956322
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500172299827200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |