Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017- 06-19] 80 sequences; 53,151,282 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1 120 4e-22 seq12 96.9 4e-15 >seq1 Length=15654088 Score = 120 bits (132), Expect = 4e-22 Identities = 607/946 (64%), Gaps = 30/946 (3%) Strand=Plus/Plus Query 106447 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 106506 |||| ||| || || || | || |||| ||||| |||||| |||||| | | Sbjct 14220567 GACAAACTGCGGCAGCGCCAACGACGCCAGGTTGCACACAGCCACCTCATCGGGCGC-GA 14220625 Query 106507 GTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 106566 |||||| | || || || |||| ||| || || || || |||| ||||| ||||| Sbjct 14220626 GTACTCGACGATCTCGGTGCACAGGTTAGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTT 14220685 Query 106567 ACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 106626 ||||| |||||| || ||||| |||||| |||| | || ||||| ||||| | Sbjct 14220686 GCTCTTGCGGTTGCAGTGGTCTTTGTACAGCATGAAGGGGTTGCCAGTCTCGGTCTGGGC 14220745 Query 106627 CTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAA-TGGCGTTGGCCCGT-CCCTC 106683 || ||| || || | ||||| | | ||| || | | | ||| |||| | ||||| Sbjct 14220746 CTCGAGGATGGCATACCACAGCTTTTGCGCCTTGAGCGTCTTGCG---GCCCTTGCCCTC 14220802 Query 106684 CGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGG 106743 |||||||||| ||| | || || ||||| || || ||| | || || || Sbjct 14220803 ACGCTCGTACTTTTCGTACAAAGCCTCGAACTCGTCGCCGTAGCAGTCTGCTAGGCCAGG 14220862 Query 106744 TGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAG 106803 || || || || | || | ||| | || || |||||||||||||||||| || Sbjct 14220863 GCACTCGTTGGGGCACATGAGCGTCCAGTCGCCGTTCTTCTCAACCCGCTTCATGAATAG 14220922 Query 106804 GTCTGGAATCCACAGGG--ATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGG 106861 |||||| ||||| |||| | |||| || || | || ||| || | || ||| Sbjct 14220923 GTCTGGGATCCATAGGGCCAGGAAA--AGGTCGCGGGCGCGGATCTCCTCCTTGCCGTGG 14220980 Query 106862 TTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCG 106921 || || | || |||||||| | | || |||||||| ||||| ||||||| || Sbjct 14220981 TTCTTGCGCAGGTCGAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAGATAGATGGCA 14221040 Query 106922 ATAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATAC 106977 | | || | | | | ||| | || | || || || || ||| ||| || || Sbjct 14221041 AAGGCGCCGGGGCGCTTGTTG-CCACCCTGGTCGACGTAACGGGCCGTGTTGTTGAAAAC 14221099 Query 106978 GCGAAGCATTGGAATAATACCATCTGATTGACCATTTGT-CCCCCGA-ATACGAGATTTA 107035 || ||||| || | || || | ||| || || || || ||| || ||| Sbjct 14221100 ACGTAGCATGGGCACGATGCCGTTGGATGTGCCGTTGGTGCCGGCGATGTAGGAG--CCC 14221157 Query 107036 TTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCA 107095 |||| | | ||||| | | || ||||| || ||| ||| ||||| ||| Sbjct 14221158 GTGGCGCGGATGCGGTGGATATTGAGGCCGATACCGCCGGCCATCTTGGAGATCATGGCA 14221217 Query 107096 CACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAG 107155 || | || || | |||||||| | ||| ||| ||||| || ||| |||||| Sbjct 14221218 CAGGTTTTGAGGGTGTCGTAGATACCATCGATGCTGTCGTCCTTCATGTCGACCAGGAAG 14221277 Query 107156 CAACTGGACATCTGCGGTCT-TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAAT 107214 || |||| ||| || || || || || || |||||||| || || | ||||| | Sbjct 14221278 CACGACGACAGCTG-GGCCTGGGGCGTGCCGGCGTTGAAGAGAGTGGGAGAGGCGTGGGT 14221336 Query 107215 GAACATACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCG 107272 ||| || |||| ||||| || ||| ||||| | || || |||| || || Sbjct 14221337 GAA-GTA-CTTGCTCGACATGAGGTTGTACGTCTCGAGCACGCGCTCGATGTTGTCGCCC 14221394 Query 107273 TGGATGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCG 107332 |||||||| || || ||||| | ||||| ||||| || | || |||| ||| Sbjct 14221395 CAGATGCCGACAGCGACGCGCATGATCATGTGCTGGGGGCGCTCGACGATCTTGCCGTCG 14221454 Query 107333 AGCCGTTGA--AGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTA 107376 ||| |||| || || ||| ||||| |||| |||||||| Sbjct 14221455 AGC--TTGAGCAGGTACGAGCGCTCCAGGGTCTTGAAGCCAAAGTA 14221498 >seq12 Length=9596913 Score = 96.9 bits (106), Expect = 4e-15 Identities = 148/210 (70%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| ||| ||| |||||||| || || || || || || || |||||| ||||| Sbjct 6218539 GGCAAAGTCCGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTAAGGCC 6218598 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392 ||||| || || |||||||||| ||| | || | | || | ||| ||||||||| Sbjct 6218599 AGGCATCAGGCCGCGCTTCTTCAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGAT 6218658 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTC--- 117449 |||||| || ||||| |||| || ||| ||| |||| ||||| |||| Sbjct 6218659 ACCCTCAACGGCGGCAAAGGCAATGAGCCGCGAGGCAAAGG---TCGACTTCTTGTCGGA 6218715 Query 117450 AAACCATTTCATTGCCCATTTCGCCTTCTT 117479 || ||| |||| ||||| | |||||||| Sbjct 6218716 AATCCACTTCAAAGCCCAGTCGGCCTTCTT 6218745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980210019200