Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017- 06-19] 80 sequences; 53,151,282 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq23 113 3e-20 seq67 104 2e-17 >seq23 Length=7462253 Score = 113 bits (124), Expect = 3e-20 Identities = 144/197 (73%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 ||||| || ||||| ||||| ||||| || || | || |||| ||||||||||| || Sbjct 7209967 GTGCTCTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCCTCCAGCTGTTTGCCC 7209908 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 ||||| || || || |||||||| | || | ||||||||||| ||||| ||| Sbjct 7209907 GCAAAGATCAGGCGCTGCTGGTC-AGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 7209849 Query 34905 ACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964 || | |||| || | | ||| || || | ||| || || || |||||||| ||| Sbjct 7209848 ACATTGTCGATCGTGTCGCTCGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTC 7209789 Query 34965 TTCACAAAGATCTGCAT 34981 ||||||||||||||||| Sbjct 7209788 TTCACAAAGATCTGCAT 7209772 >seq67 Length=2709248 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||||| || ||||| ||||| || ||||| || | || | || ||| Sbjct 458695 ACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGACAGAGTGCGACCGTCCTCC 458754 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || | |||||||| || | || | ||||||||||| | Sbjct 458755 AGCTGCTTGCCCGCAAAGATCAAACGTTGCTGATCCGGGGGGATACCCTCCTTGTCTTGA 458814 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| || ||| | |||| || | ||| || || | || ||||| || Sbjct 458815 ATCTTCGACTTCACGTTGTCGATCGTGTCTGATGACTCGACTTCCAGCGTGATGGTCTTG 458874 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || ||||| ||||| || |||||||||||| Sbjct 458875 CCGGTGAGCGTCTTGACGAAGATCTGCATA 458904 Score = 96.9 bits (106), Expect = 2e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| |||||||| | | | || |||| |||||||| || || || || Sbjct 458485 TCCTTCTGAATGTTGTAGTCCGACAAGGTACGGCCATCCTCCAGCTGCTTGCCCGCGAAG 458544 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT-CTGTTTGACGGA 34909 || || || |||||||| | || | |||||||| || ||||| || ||| ||| Sbjct 458545 ATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTATCCTGGATCTTGCTCTTT-ACGTT 458603 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | |||| || | || || |||| || ||||||||||| || | |||||||| Sbjct 458604 ATCAATCGTATCGGATGATTCGACTTCGAGCGTGATGGTTTTTCCAGTCAAGGTCTTCAC 458663 Query 34970 AAAGATCTGCAT 34981 ||||||||||| Sbjct 458664 GAAGATCTGCAT 458675 Score = 96.9 bits (106), Expect = 2e-15 Identities = 145/202 (72%), Gaps = 8/202 (4%) Strand=Plus/Plus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 ||||| || ||||| ||||| ||||| ||||| | || | || || ||||| || ||| Sbjct 458935 GTGCTCTCCTTCTGGATGTTGTAGTCGGAAAGAGTCCGACCGTCCTCGAGCTGCTTCCCG 458994 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 || || || || || |||||||| | || | ||||||||||| ||||||| ||| Sbjct 458995 GCGAAGATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTCGACTTG 459054 Query 34905 ACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAG 34960 || || | ||||| | ||| | ||| || || | ||| ||||| || ||||| || Sbjct 459055 AC--AT--TGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATGGTCTTGCCCGTCAG 459110 Query 34961 AGTCTTCACAAAGATCTGCATA 34982 || || || || ||||||||| Sbjct 459111 GGTTTTGACGAAAATCTGCATA 459132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633283482240