Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017-
06-19] 80 sequences; 53,151,282 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq23 113 3e-20
seq67 104 2e-17
>seq23
Length=7462253
Score = 113 bits (124), Expect = 3e-20
Identities = 144/197 (73%), Gaps = 1/197 (1%)
Strand=Plus/Minus
Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844
||||| || ||||| ||||| ||||| || || | || |||| ||||||||||| ||
Sbjct 7209967 GTGCTCTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCCTCCAGCTGTTTGCCC 7209908
Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904
||||| || || || |||||||| | || | ||||||||||| ||||| |||
Sbjct 7209907 GCAAAGATCAGGCGCTGCTGGTC-AGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 7209849
Query 34905 ACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964
|| | |||| || | | ||| || || | ||| || || || |||||||| |||
Sbjct 7209848 ACATTGTCGATCGTGTCGCTCGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTC 7209789
Query 34965 TTCACAAAGATCTGCAT 34981
|||||||||||||||||
Sbjct 7209788 TTCACAAAGATCTGCAT 7209772
>seq67
Length=2709248
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | ||||| || ||||| ||||| || ||||| || | || | || |||
Sbjct 458695 ACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGACAGAGTGCGACCGTCCTCC 458754
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| || || ||||| || | |||||||| || | || | ||||||||||| |
Sbjct 458755 AGCTGCTTGCCCGCAAAGATCAAACGTTGCTGATCCGGGGGGATACCCTCCTTGTCTTGA 458814
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
|||||| || ||| | |||| || | ||| || || | || ||||| ||
Sbjct 458815 ATCTTCGACTTCACGTTGTCGATCGTGTCTGATGACTCGACTTCCAGCGTGATGGTCTTG 458874
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| ||||| ||||| || ||||||||||||
Sbjct 458875 CCGGTGAGCGTCTTGACGAAGATCTGCATA 458904
Score = 96.9 bits (106), Expect = 2e-15
Identities = 138/192 (72%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||||||||| |||||||| | | | || |||| |||||||| || || || ||
Sbjct 458485 TCCTTCTGAATGTTGTAGTCCGACAAGGTACGGCCATCCTCCAGCTGCTTGCCCGCGAAG 458544
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT-CTGTTTGACGGA 34909
|| || || |||||||| | || | |||||||| || ||||| || ||| |||
Sbjct 458545 ATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTATCCTGGATCTTGCTCTTT-ACGTT 458603
Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969
| |||| || | || || |||| || ||||||||||| || | ||||||||
Sbjct 458604 ATCAATCGTATCGGATGATTCGACTTCGAGCGTGATGGTTTTTCCAGTCAAGGTCTTCAC 458663
Query 34970 AAAGATCTGCAT 34981
|||||||||||
Sbjct 458664 GAAGATCTGCAT 458675
Score = 96.9 bits (106), Expect = 2e-15
Identities = 145/202 (72%), Gaps = 8/202 (4%)
Strand=Plus/Plus
Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844
||||| || ||||| ||||| ||||| ||||| | || | || || ||||| || |||
Sbjct 458935 GTGCTCTCCTTCTGGATGTTGTAGTCGGAAAGAGTCCGACCGTCCTCGAGCTGCTTCCCG 458994
Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904
|| || || || || |||||||| | || | ||||||||||| ||||||| |||
Sbjct 458995 GCGAAGATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTCGACTTG 459054
Query 34905 ACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAG 34960
|| || | ||||| | ||| | ||| || || | ||| ||||| || ||||| ||
Sbjct 459055 AC--AT--TGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATGGTCTTGCCCGTCAG 459110
Query 34961 AGTCTTCACAAAGATCTGCATA 34982
|| || || || |||||||||
Sbjct 459111 GGTTTTGACGAAAATCTGCATA 459132
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324633283482240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |