Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017- 06-19] 80 sequences; 53,151,282 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1 522 5e-143 seq12 178 2e-39 >seq1 Length=15654088 Score = 522 bits (578), Expect = 5e-143 Identities = 1267/1881 (67%), Gaps = 87/1881 (5%) Strand=Plus/Plus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | || | || ||||| | |||||| || ||||||||||| ||||| Sbjct 14219674 ACGGTGAACTGGATAGGCTGGGCGGCAGCTTGGGTGCGCAGGTAGTACATGCCCGTCTTG 14219733 Query 212613 AGGCCCTTGCC-CCAGCCGTGCATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATTCTG 212671 ||||| | || ||||||| | |||||| | || | |||| | || || Sbjct 14219734 AGGCC-TAGCTTCCAGCCGGCGAAGTGCATAGACGTTA---TCTTGCCC-----ATGGTG 14219784 Query 212672 GTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCT 212731 | | | || || || | ||| || ||||| ||||| ||||| | | | | Sbjct 14219785 GGC-------TCGCGCATGTGGATGTTGAGCGACTGCGATTGGTCGATGAAGGCGCCGCG 14219837 Query 212732 GTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTC 212791 |||||| ||||| | | || | ||| |||| |||||| || |||||| | | Sbjct 14219838 GTCAGCCGCCATCTGGACGACGGTGCGCTGCGAGATCTCCCAGACCGTCTTGTACAGGCG 14219897 Query 212792 TTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCC--CCTGTGT-ATGGTCAG 212848 ||| ||||| |||| || || ||||||||| | || || ||| | ||| | | Sbjct 14219898 CTTGGTATCCTCGGGGATGCTGGCGATGTTCTGGATGGAGCCGCCCTCGGCGATGATGCG 14219957 Query 212849 CTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCT-CCAGGCACTTGACCAGGTGAG 212907 | | ||||| ||| ||| | ||| | || ||||| ||| | || | Sbjct 14219958 GTTCTT---CATGTTGTCGGACCACAAGCCAA-GCTCGACCAGGTCCTTCAGGAGCCATG 14220013 Query 212908 GGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGG 212967 ||||||| | |||||| || || | |||||| | | |||||| | ||| || ||||||| Sbjct 14220014 GGTTGACGACCTGGAACTCGCCGGCGAGCACGCGACGCTGGTAGATGTTGGACGTGTAGG 14220073 Query 212968 GCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCA 213027 |||||| || ||||||||| ||||||||||| | |||||||| ||||||||||| |||| Sbjct 14220074 GCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGCTGGCGGTGGGCATGGGCGCCA 14220133 Query 213028 CCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGA-AGCTCTGCCCAGTCC 213086 | || || ||| | ||| ||||||| |||| |||| ||| |||||||| Sbjct 14220134 CAAGCAGCGAGTTGCGCACACCGTGCTGCTTGATGTC-CGCCTTGAGCGACTCCCAGTCC 14220192 Query 213087 CATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTG 213146 || | ||| | ||| |||||||||||||| |||||| |||||| | Sbjct 14220193 CAGAGCTCCGACGG---------CTTGACGTTCCACATGTCGTACTGCAGGATGCCCTGC 14220243 Query 213147 CTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGAC 213206 ||| || ||||| ||| | ||||||| ||| ||||| ||||||||||| || Sbjct 14220244 GACACAGGCGAGCCCTCGTATGTCGAGTAGGTGCCCTGCTCGCGCGCCAGCTCGCACGAG 14220303 Query 213207 GCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCT 213266 || |||||| |||| ||||||||| ||||| |||| | ||||||||| ||||| Sbjct 14220304 GCGGTCAGGGCGGCGTGGTAGATGGTCTCAAAGATCTGCTTGTTGAGCTCGCGAGCCTCG 14220363 Query 213267 GGGGACGTGAAGGGCATCATCATGCGTT-GGAACACATCAGCCAGCCCCTGGACCCCGAT 213325 || ||| |||||||| || ||| | |||| |||| ||||| ||||| || || | Sbjct 14220364 GGAGACTCGAAGGGCAGGCGCA-GCGCTAGGAAGGCATCGGCCAGACCCTGCACGCCTAG 14220422 Query 213326 GCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGC 213384 ||||||||| | ||| | |||||| || |||| ||||| | ||||| ||||| Sbjct 14220423 GCCGATGGGCCGGTGGCGCAGGTTGCTGTTACGAGC-CTCCTGGACCGGGTAGTAGTTGA 14220481 Query 213385 AGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGT 213444 ||||||||||||||| || || || | | || | ||| || | | ||| | | || Sbjct 14220482 CGTCGATGATCTTGTTAAGATTACGAACGACGACCTGGGTCACCTCGTGCAGCTTC-CG- 14220539 Query 213445 GATTGAACACGTAGCCCCCGTCCTGC------ACAAACTCAGGCAGGGCGATGCTGGCCA 213498 ||| | ||| | || || | ||||||| ||||| || | |||| Sbjct 14220540 ----GAAGTCATAGGCGCCCTCGTTGTAGTCGACAAACTGCGGCAGCGCCAACGACGCCA 14220595 Query 213499 GGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGC 213558 ||||||| || |||||||| | | | | |||||| | |||||||||||||||||| Sbjct 14220596 GGTTGCACACAGCCACCTCATCGGGCGC-GAGTACTCGACGATCTCGGTGCACAGGTTAG 14220654 Query 213559 TGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAA-TCCTTGTAG 213617 || ||||||||||||||||||| ||||| ||| ||| | |||| || ||||| Sbjct 14220655 AGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTT-GCGGTTGCAGTGGTCTTTGTAC 14220713 Query 213618 AGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCT--CCAGAGGTACC 213675 |||||| ||||| || ||||| ||||| | | || || ||| ||| || | Sbjct 14220714 AGCATGAAGGGGTTGCCAGTCTCGGTCTGGGCCTCGAGGAT--GGCATACCACAGCTTTT 14220771 Query 213676 TGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCG 213734 ||||||| | | || | || | | | | | |||||||| |||||| | | Sbjct 14220772 GCGCCTTGAGC----GTCTTGCGGCCCTTGCCCTCACGCTCGTACTTTTCGTACAAAGCC 14220827 Query 213735 TTGAATTCGTGGCCCCAG-ACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCT 213793 | ||| |||| ||| || | ||| | || || || || ||| |||||||| | Sbjct 14220828 TCGAACTCGTCGCCGTAGCAGTCTG-CTAGGCCAGGGCACTCGTTGGGGCACATGAGCGT 14220886 Query 213794 CCAGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGA 213852 |||||| |||| | |||| || | || |||||| ||||| |||| ||| || || || Sbjct 14220887 CCAGTCGCCGTTCTTCTCA-ACCCGCTTCATGAATAGGTCTGGGATCCATAGGGCCAGGA 14220945 Query 213853 ACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAA 213912 | ||||| | || | |||| ||| || ||| |||||||| || || || || | Sbjct 14220946 AAAGGTCGCGGGCGCGGATCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCGAGGAACTCGA 14221005 Query 213913 AGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGC 213969 | | ||| |||||||||||||||| ||||||||||||||||| | || | ||||| | Sbjct 14221006 ACACGTCGGCGTGCCACGGCTCCAGATAGATGGCAAAGGCGCCGGGGCGCTTGTTGCCAC 14221065 Query 213970 CCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGG 214029 ||||||| || | |||| ||||||| | || || | ||| || | ||||||| Sbjct 14221066 CCTGGTCGACGTAACGGGCCGTGTTGTTGAAAACACGTAGCATGGGCACGATGCCGTTGG 14221125 Query 214030 ACTGT-CCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGA---- 214084 | ||| |||||||| || || || || ||||| | ||| | || ||| |||| Sbjct 14221126 A-TGTGCCGTTGGTGCCGGCGATGTAGGAGCCCGTGGCGC---GGATGC-GGTGGATATT 14221180 Query 214085 GAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGAT 214144 ||| || || || ||||| ||||||||||||||| ||| | | || || ||| Sbjct 14221181 GAGGCCGATACCGCCGGCCATCTTGGAGATCATGGCACAGGTTTTGAGGGTGTCGTAGAT 14221240 Query 214145 GCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGA 214204 || | |||||||| || | | || | || |||||| ||| ||||||| | || Sbjct 14221241 ACCATCGATGCTGTCGTCCTTCATGTCGACCAGGAAGCACGACGACAGCTGGGCCTGGGG 14221300 Query 214205 CGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCT 214264 || ||| | |||||| || ||||| ||| ||| | | ||||| | || | ||| | Sbjct 14221301 CGTGCCGGCGTTGAAGAGAGTGGGAGAGGCGTGGGTGAAGTACTTGCTCGACATGAGGTT 14221360 Query 214265 GTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAG 214324 ||| ||||| || || ||||| || ||| | |||| | ||| | Sbjct 14221361 GTACGTCTCGAGCACGCGCTCGATGTTGTCGCCCCAGATGCCGACAGCGACGCGCATGAT 14221420 Query 214325 CATGTGCTGGGGCCTCTCTATGGGTCCTTTGGGGCC---CTTGAGCAGGTAGGAGCGCTC 214381 |||||||||||| | ||| | | || ||| | | |||||||||||| |||||||| Sbjct 14221421 CATGTGCTGGGGGCGCTCGA-CGATC--TTGCCGTCGAGCTTGAGCAGGTACGAGCGCTC 14221477 Query 214382 CAGAGTCTTGAACCCAAAGTA 214402 ||| |||||||| |||||||| Sbjct 14221478 CAGGGTCTTGAAGCCAAAGTA 14221498 >seq12 Length=9596913 Score = 178 bits (196), Expect = 2e-39 Identities = 355/521 (68%), Gaps = 19/521 (4%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || ||||| | || || |||||||| ||||| || ||| ||||||||||| Sbjct 6218248 CTGGTACTCGCCCACGCGCTTTTCGAAGAAGTTGGTCTTGCCGCCCAGAGAGATGTTCTC 6218307 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTT-CCAGCA 47957 ||||||| ||||||||||| || | || ||| ||||| ||| | |||| | Sbjct 6218308 CATGAAGTCGAAGGGGTTGGATGCGCGGTAGACCT-TGTCATTCCCGAGAGCAACCAGGA 6218366 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 || | || || ||| |||||||||| | ||||||| | ||||||||| | || | Sbjct 6218367 GGCGGTCTGCCACGAACTCGATGTACTGCTTCATGAGGTTCGAGTTCATGCCGAGCAGCG 6218426 Query 48018 ACACG-GGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 ||| |||| |||| || || ||||| | ||| |||| || || || | | ||| Sbjct 6218427 -CACAAGGCAGGGCCTCGGTCAGGAACTCTTGCTCGATCTTGACAGCATCGACGATGATC 6218485 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTT------GGCATAGAGCATG 48130 | || || | || ||| || || ||| ||| || |||| | | Sbjct 6218486 TCCT-----CGATCATTTGC----TTGCTGGGCCGGTTCTTCATGTGGGAGAAGAGAAGG 6218536 Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 |||||||||||| |||||| || ||||| || ||||||| ||||||||||| || Sbjct 6218537 CAGGCAAAGTCCGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTAAGG 6218596 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 |||||||| | || | || || |||||||| || | || || | || ||||||| Sbjct 6218597 CCAGGCATCAGGCCGCGCTTCTTCAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAG 6218656 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310 || ||||| || || || || || |||||| | | || | | |||||||| || Sbjct 6218657 ATACCCTCAACGGCGGCAAAGGCAATGAGCCGCGAGGCAAAGGTCGACTTCTTGTCGGAA 6218716 Query 48311 ATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 ||||| | |||||||| |||||||| ||||||||| Sbjct 6218717 ATCCACTTCAAAGCCCAGTCGGCCTTCTTACGGATGCATGG 6218757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931531868467200