Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017- 06-19] 80 sequences; 53,151,282 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1 363 3e-95 seq12 150 3e-31 >seq1 Length=15654088 Score = 363 bits (402), Expect = 3e-95 Identities = 835/1232 (68%), Gaps = 64/1232 (5%) Strand=Plus/Plus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475 |||||||| |||||||||||||||||||||||| ||||||||| ||| | |||||||| Sbjct 14220307 GTCAGGGCGGCGTGGTAGATGGTCTCAAAGATCTGCTTGTTGAG-CTCGCGAGCCTCGGG 14220365 Query 221476 AGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535 ||| |||||||| |||||| | ||| | |||||||| ||||| || || | || Sbjct 14220366 AGACTCGAAGGGCAGGCGCAGCGCTAGGAAGGCATCGGCCAGACCCTGCACGCCTAGGCC 14220425 Query 221536 GATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACG 221593 |||||||| ||| | | |||| | || | || |||| |||| || |||||||| Sbjct 14220426 GATGGGCCGGTGGCGCAGGTTGCTGTTACGAGC-CTCCTGGACCGGG-TAGTAGTTGACG 14220483 Query 221594 TCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGA 221653 ||||| | ||||| || || || || ||| | ||||||| ||||||| || Sbjct 14220484 TCGATGATCTTGTTAAGATTACGAACGACGACCTGGGTCACCTCGTGCAGCTTCCGGAAG 14220543 Query 221654 TTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAA-GCGTTTAGGGCAACGCT 221712 | || | | |||| |||| | | || ||||| ||| | ||||| Sbjct 14220544 T-------CA--TAGGCGCCCTCGTTGTAG---TCGACAAACTGCGGCAGCGCCAACGAC 14220591 Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 | ||||||| ||||| |||||||| || | | |||| | |||||| || || || Sbjct 14220592 G-CCAGGTTGCACACAGCCACCTCATCGG-GCGCGAGTACTCGACGATCTCGGTGCACAG 14220649 Query 221773 GTT---GCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-T 221828 ||| ||||| |||||| ||||||| || || || |||||| ||| ||| | | Sbjct 14220650 GTTAGAGCTGCG---GATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTG-CAGTGGT 14220705 Query 221829 CCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGA 221888 | ||||| ||||| ||||| ||||||||| ||| ||| | || || | ||| | Sbjct 14220706 CTTTGTACAGCATGAAGGGGTTGCCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCACA 14220765 Query 221889 GTTCTCTGGCGC--TCACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCC 221940 | || | |||| | | |||| | |||| | ||| |||| |||||| ||| Sbjct 14220766 G--CTTTTGCGCCTTGAGCGTCTTGCGGCCCTTGCCCTCACGCTCGTACTTTTCGTAC-- 14220821 Query 221941 GGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGG 222000 | ||| | | |||| || ||||| || | ||||| || ||| | ||| Sbjct 14220822 -----AAAGCCT--CGAACTCGTCGCCGTAGCAGTCTGCTAGGCCAGGGCACTCGTTGGG 14220874 Query 222001 ACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCA 222060 ||||| || |||||| ||| | | |||| || |||||| ||||| |||||||| Sbjct 14220875 GCACATGAGCGTCCAGTCGCCGTTCTTCTCAACCCGCTTCATGAATAGGTCTGGGATCCA 14220934 Query 222061 CAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATC 222120 || ||| | || || || | || || ||||||| ||||| ||| || | ||| || Sbjct 14220935 TAGGGCCAGGAAAAGGTCGCGGGCGCGGATCTCCTCCTTGCCGTGGTTCTTGCGCAGGTC 14220994 Query 222121 CAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCG 222180 | ||||| || | ||| |||||||||||||||||||||| ||| | |||||||| || Sbjct 14220995 GAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAGATAGATGGCAAAGGCGCCGGGGCG 14221054 Query 222181 CTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTAC 222240 ||||||||||||||| || || | || |||||| | || || | || || Sbjct 14221055 CTTGTTGCCACCCTGGTCGACGTAACGGGCCGTGTTGTTGAAAACACGTAGCATGGGCAC 14221114 Query 222241 CAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACT 222300 | ||||||||| ||||||||||| ||||| | || ||| | || | | Sbjct 14221115 GATGCCGTTGGATGTGCCGTTGGTGCCGGCGATGTAGGAGCCCGTGGCGC---GGATGC- 14221170 Query 222301 GGCAGACAT----GCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAG 222356 || || || ||||||||| ||||| || ||||||||||| ||| | ||||| | Sbjct 14221171 GGTGGATATTGAGGCCGATACCGCCGGCCATCTTGGAGATCATGGCACAGGTTTTGAGGG 14221230 Query 222357 TGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCT 222416 |||| ||| || || || ||| ||||| | || | ||| || || ||||||| || Sbjct 14221231 TGTCGTAGATACCATCGATGCTGTCGTCCTTCATGTCGACCAGGAAGCACGACGACAGCT 14221290 Query 222417 GAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAG 222476 | | | || | | |||||| || || |||||| |||||| || ||||| || | Sbjct 14221291 GGGCCTGGGGCGTGCCGGCGTTGAAGAGAGTGGGAGAGGCGTGGGTGAAGTACTTGCTCG 14221350 Query 222477 ACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGGCG 222535 |||| || | ||||||||| | || | |||||||||| ||| || | | | ||| Sbjct 14221351 ACATGAGGTTGTACGTCTCGAGCACGCGCTCGATGTTGTCGCCCCAGATGCCG-ACAGCG 14221409 Query 222536 CATCTCATGTACATGTACTGGGGCCTCTCCACAGGAC---CCTTGGAGCTGGAGAGCAGG 222592 | |||| ||||| |||||| | ||| || | | || | ||||| ||||||| Sbjct 14221410 ACGCGCATGATCATGTGCTGGGGGCGCTCGAC-GATCTTGCCGTCGAGCT--TGAGCAGG 14221466 Query 222593 TACGATTTTTCCAGAGTCTTGAACCCAAAGTA 222624 ||||| ||||| |||||||| |||||||| Sbjct 14221467 TACGAGCGCTCCAGGGTCTTGAAGCCAAAGTA 14221498 Score = 122 bits (134), Expect = 2e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| || || | |||||| | | |||||| | ||| || ||| | || Sbjct 14220015 GTTGACGACCTGGAACTCGCCGGCGAGCACGCGACGCTGGTAGATGTTGGACGTGTAGGG 14220074 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| || ||||||||||||||| ||||| | ||||||||||||||||||||| ||||| Sbjct 14220075 CTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGCTGGCGGTGGGCATGGGCGCCAC 14220134 Query 221236 CAGCAGACTGTTGCGCA 221252 ||||| |||||||| Sbjct 14220135 AAGCAGCGAGTTGCGCA 14220151 >seq12 Length=9596913 Score = 150 bits (166), Expect = 3e-31 Identities = 344/519 (66%), Gaps = 16/519 (3%) Strand=Plus/Minus Query 25810 CCCA-GCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTAC 25868 |||| ||||| | |||||| ||||| |||||||||| | | ||| | || Sbjct 6218758 CCCATGCATCCGTAAGAAGGCCGACTGGGCTTTGAAGTGGATTTCCGACAAGAAGTCGAC 6218699 Query 25869 GTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT 25928 |||| | |||||| | |||||||| || || ||||| ||||| ||||||||| | || Sbjct 6218698 CTTTGCCTCGCGGCTCATTGCCTTTGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTT 6218639 Query 25929 TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGA 25988 ||| ||||||||||||| ||| || || ||||| || || ||| |||||||| Sbjct 6218638 TGCCTCCATCTTCTGGCTGAAGAAGCGCGGCCTGATGCCTGGCCTTACCTTCTCCAACGA 6218579 Query 25989 GCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCA 26048 ||||||| | ||||||||||| |||| || ||||||||||| |||| | | ||| Sbjct 6218578 GCTCATCTCTCGTGACGAGGGTCTGCACACGGACTTTGCCTGCCTTCTCTTCTC---CCA 6218522 Query 26049 CTTGCTCCACAAACCTTC---TCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGG 26104 | || | |||| | |||| | | || | |||||| || ||||| Sbjct 6218521 CATG----AAGAACCGGCCCAGCAAGCAAATGATCGAGGAGATCATCGTCGATGCTGTCA 6218466 Query 26105 AGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACA 26164 |||||||| | ||||| | | ||||||||| | Sbjct 6218465 AGATCGAGCAAGAGTTCCTGACCGAGGCCCTGCCTTGTGCGCTGCTCGGCATGAACTCGA 6218406 Query 26165 GACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTG--TGCCAGCTGGGACT 26222 ||||||| || ||||| |||| ||||| |||| || ||| ||| | |||| | Sbjct 6218405 ACCTCATGAAGCAGTACATCGAGTTCGTGGCAGACCGCCTCCTGGTTGCTCTC-GGGAAT 6218347 Query 26223 CGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGG 26282 | || ||||| | | | ||||| |||||||| ||||| ||||| || ||| || Sbjct 6218346 -GACAAGGTCTACCGCGCATCCAACCCCTTCGACTTCATGGAGAACATCTCTCTGGGCGG 6218288 Query 26283 GAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 |||||||||||||| |||||| | || ||||| || || Sbjct 6218287 CAAGACCAACTTCTTCGAAAAGCGCGTGGGCGAGTACCA 6218249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928843871155200