Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017- 06-19] 80 sequences; 53,151,282 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq12 127 6e-24 seq45 96.9 1e-14 >seq12 Length=9596913 Score = 127 bits (140), Expect = 6e-24 Identities = 209/299 (70%), Gaps = 2/299 (1%) Strand=Plus/Minus Query 302567 TAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTA 302626 ||| |||||| | ||||| ||||| ||||| || ||||| ||| | || || | Sbjct 4044960 TAACGTCTTCGAGGGCCTTGACCAAACGTCGCTGGATGTAACCCGTTTCTGCCGTCTTGA 4044901 Query 302627 CAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTC 302686 | || || || || ||||| | |||||| |||| || ||||| || | ||| || | Sbjct 4044900 CGGCCGTGTCGATCAGACCCTCTCGACCAGCCATGGCGTGGAAAAAGAACTCGGTTGG-C 4044842 Query 302687 GT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAAC 302745 || || || | | | ||| |||| ||||||||||||||||| ||||| | ||| Sbjct 4044841 GTCAGACCACGCAGGTACGAGTTCTCTACGAAACCACGCGCCTCTGGCGAGTAATCGTCT 4044782 Query 302746 TTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACG 302805 ||||| ||||| |||||||||| || | | || | || |||||||| || ||||| Sbjct 4044781 TTGGTGAAGTGCGGCAGGGTCCGGTATTTGAACCCAAAGGGAATACGCTTGCCCTCAACA 4044722 Query 302806 TTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864 ||||||| |||| || ||||||||||||| || | | | |||||| || || Sbjct 4044721 ATCTGCTGACCCACCAGCGCCGTCATCTGCGAAATGTTGATAGCTGAGCCCTTCGAACC 4044663 >seq45 Length=5506958 Score = 96.9 bits (106), Expect = 1e-14 Identities = 170/243 (70%), Gaps = 6/243 (2%) Strand=Plus/Minus Query 251421 ATTACACACATGG--ACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAG 251478 ||| |||| ||| || | | |||| || || | ||| | ||||| ||||| |||| Sbjct 2603012 ATTTCACAAATGTGCACCCGGAAAGCGTCCGAGACCTCAAAGAGCCGCTCCTTGAGGAAG 2602953 Query 251479 CGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCA 251538 | || ||||||| |||||| |||||||| |||||||| |||||||| |||||||| Sbjct 2602952 GCTGCGGCGCCGTGTGCAATCATGCAATCACGTTCCATTTCTCCGAAACGGAGACCACCG 2602893 Query 251539 TCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGA-GAT-TAACCATAGGACCGATGGAGC 251596 || | || | ||||||| | ||||| || || | ||| | | | ||| || || | Sbjct 2602892 TCCCTGGCTCGACCCTCGACCGGCTGCCGCGTCATGATCTGA--AGAGGCCCTCGGGCAC 2602835 Query 251597 GGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGA 251656 || || ||| || | ||||| || ||||||||||||| | | || |||| || Sbjct 2602834 GGGCGTGGATCTTGTCGTCCACCATGTGGCGGAGACGCTGGTAGTACGTAGGGCCGAAGA 2602775 Query 251657 AGA 251659 ||| Sbjct 2602774 AGA 2602772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816091386960