Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017- 06-19] 80 sequences; 53,151,282 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq1 109 2e-18 seq12 91.5 5e-13 >seq1 Length=15654088 Score = 109 bits (120), Expect = 2e-18 Identities = 364/547 (67%), Gaps = 27/547 (5%) Strand=Plus/Minus Query 254971 CGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGG 255030 |||||| | || ||| | ||||| ||||||||| ||| || |||||||| || || || Sbjct 14221121 CGGCATCGTGCCCATGCTACGTGTTTTCAACAACACGGCCCGTTACGTCGACCAGGGTGG 14221062 Query 255031 CGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACATTGAACG 255090 | ||| ||||| || || || ||||||| ||||||||||||||||||||| || || Sbjct 14221061 CAACAAGCGCCCCGGCGCCTTTGCCATCTATCTGGAGCCGTGGCACGCCGAC-GTGTTCG 14221003 Query 255091 -GTTTTTACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTACA 255149 ||| | ||| | | || ||||| |||||| | |||||||||| | | | Sbjct 14221002 AGTTCCTCGACCTGCGCAAGAACCACGGCAAGGAGGAGATCCGCGCCCGCGACCTTTTCC 14220943 Query 255150 CCGCTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGA-ACGAGACGAGACCTGGAGC 255208 || | ||| | || || || ||| || || || | || ||| ||||| Sbjct 14220942 TGGCCCTATGGATCCCAGACCTATTCATGAAGCGGGTTGAGAAGA-ACGGCGACTGGACG 14220884 Query 255209 CTCATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAA 255268 |||||||| |||||| | || || |||| |||| | || |||||||| || Sbjct 14220883 CTCATGTGCCCCAACGAGTGCCCTGGCCTAGCAGACTGCTACGGCGACGAGTTCGAGGCT 14220824 Query 255269 CTGTATCTGGAGTACGAGCGTGCCGGC-CGGTTCG---TACGC-CAAGTGCCCGCGAAGA 255323 |||| |||||||||||| ||| || || |||| |||| ||| | | Sbjct 14220823 TTGTACGAAAAGTACGAGCGTGAGGGCAAGGGCCGCAAGACGCTCAAG-----GCGCAAA 14220769 Query 255324 AGATCTGGAACACGATGGTGCGCATG--CAGCTGGAAACCGGAATGCCGTTCCTATTGCA 255381 || | ||| | | || | || | | ||| || || || | || ||| | || | Sbjct 14220768 AGCTGTGGTATGCCATCCT-CG-AGGCCCAGACCGAGACTGGCAACCCCTTCATGCTGTA 14220711 Query 255382 CAAAGACCAC-ATAAACGCACGGTCGAACCAACGCCACCGCGGTACGATACGCGGCTCGA 255440 |||||||||| || |||| | | ||||| ||| || || || ||| |||| | Sbjct 14220710 CAAAGACCACTGCAACCGCAAGAGC-AACCAGAAGAACCTGGGCACCATCCGCAGCTCTA 14220652 Query 255441 ACCTGTGCACCGAGATTACGTTGCACACGTCAGCGC---AAGAGGTGGCCGTTTGCAACT 255497 |||||||||||||||| ||| | || || |||| | |||||||| || |||||| Sbjct 14220651 ACCTGTGCACCGAGAT--CGTCGAGTAC-TC-GCGCCCGATGAGGTGGCTGTGTGCAACC 14220596 Query 255498 TGGCGTC 255504 ||||||| Sbjct 14220595 TGGCGTC 14220589 Score = 95.1 bits (104), Expect = 4e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 256127 ATCGAGGAGCACGGACTGCGCAACTCGCAACGATTGGCGCCCATGCCAACCGCCAGCACC 256186 ||| || ||||||| |||||||||||| | ||||||||||||| ||||||||||| Sbjct 14220167 ATCAAGCAGCACGGTGTGCGCAACTCGCTGCTTGTGGCGCCCATGCCCACCGCCAGCACG 14220108 Query 256187 GCTCAAATCCTGGGTAACGTGGAAAGCATCGAACCCCTGACTACCAACTTCTTCTCGCGC 256246 | || || ||||| ||| || || |||| ||| || ||||| ||| | ||| Sbjct 14220107 TCGCAGATTCTGGGCAACAACGAGTGCTTCGAGCCCTACACGTCCAACATCTACCAGCGT 14220048 Query 256247 CGCGTTCGCTCCGGCGAGTTCGCCGTGGTGAACCAGTACTTGGTGGACGACTTGGTACGA 256306 ||||| | | ||||||||||| || || |||| | | || | ||| |||| ||| Sbjct 14220047 CGCGTGCTCGCCGGCGAGTTCCAGGTCGTCAACCCATGGCTCCTGAAGGACCTGGT-CGA 14219989 Query 256307 -CTCGGTCTGTGGAACGAGAAGATGCAACAACGCATAAT 256344 || || ||||| ||| || ||| | | ||||| || Sbjct 14219988 GCTTGGCTTGTGGTCCGACAACATGAAGAACCGCATCAT 14219950 >seq12 Length=9596913 Score = 91.5 bits (100), Expect = 5e-13 Identities = 112/152 (74%), Gaps = 1/152 (1%) Strand=Plus/Minus Query 443718 GCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCCATCTTCTGGTT 443777 || ||||| | || || || | || || ||||| |||| ||||||||||||||| | Sbjct 6218679 GCCTTTGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTT-GCCTCCATCTTCTGGCT 6218621 Query 443778 GAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAGTCGGGACGA 443837 ||| ||||| || || |||| || || ||||| ||||| || ||| ||| ||||| Sbjct 6218620 GAAGAAGCGCGGCCTGATGCCTGGCCTTACCTTCTCCAACGAGCTCATCTCTCGTGACGA 6218561 Query 443838 GGGTTTGCATTGCGACTTCGCCTGTCTTCTCT 443869 |||| |||| ||||| ||||| ||||||| Sbjct 6218560 GGGTCTGCACACGGACTTTGCCTGCCTTCTCT 6218529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588334371955600