Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017-
06-19] 80 sequences; 53,151,282 total letters
Query= NC_027925.1
Length=496396
Score E
Sequences producing significant alignments: (Bits) Value
seq1 109 2e-18
seq12 91.5 5e-13
>seq1
Length=15654088
Score = 109 bits (120), Expect = 2e-18
Identities = 364/547 (67%), Gaps = 27/547 (5%)
Strand=Plus/Minus
Query 254971 CGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGG 255030
|||||| | || ||| | ||||| ||||||||| ||| || |||||||| || || ||
Sbjct 14221121 CGGCATCGTGCCCATGCTACGTGTTTTCAACAACACGGCCCGTTACGTCGACCAGGGTGG 14221062
Query 255031 CGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACATTGAACG 255090
| ||| ||||| || || || ||||||| ||||||||||||||||||||| || ||
Sbjct 14221061 CAACAAGCGCCCCGGCGCCTTTGCCATCTATCTGGAGCCGTGGCACGCCGAC-GTGTTCG 14221003
Query 255091 -GTTTTTACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTACA 255149
||| | ||| | | || ||||| |||||| | |||||||||| | | |
Sbjct 14221002 AGTTCCTCGACCTGCGCAAGAACCACGGCAAGGAGGAGATCCGCGCCCGCGACCTTTTCC 14220943
Query 255150 CCGCTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGA-ACGAGACGAGACCTGGAGC 255208
|| | ||| | || || || ||| || || || | || ||| |||||
Sbjct 14220942 TGGCCCTATGGATCCCAGACCTATTCATGAAGCGGGTTGAGAAGA-ACGGCGACTGGACG 14220884
Query 255209 CTCATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAA 255268
|||||||| |||||| | || || |||| |||| | || |||||||| ||
Sbjct 14220883 CTCATGTGCCCCAACGAGTGCCCTGGCCTAGCAGACTGCTACGGCGACGAGTTCGAGGCT 14220824
Query 255269 CTGTATCTGGAGTACGAGCGTGCCGGC-CGGTTCG---TACGC-CAAGTGCCCGCGAAGA 255323
|||| |||||||||||| ||| || || |||| |||| ||| | |
Sbjct 14220823 TTGTACGAAAAGTACGAGCGTGAGGGCAAGGGCCGCAAGACGCTCAAG-----GCGCAAA 14220769
Query 255324 AGATCTGGAACACGATGGTGCGCATG--CAGCTGGAAACCGGAATGCCGTTCCTATTGCA 255381
|| | ||| | | || | || | | ||| || || || | || ||| | || |
Sbjct 14220768 AGCTGTGGTATGCCATCCT-CG-AGGCCCAGACCGAGACTGGCAACCCCTTCATGCTGTA 14220711
Query 255382 CAAAGACCAC-ATAAACGCACGGTCGAACCAACGCCACCGCGGTACGATACGCGGCTCGA 255440
|||||||||| || |||| | | ||||| ||| || || || ||| |||| |
Sbjct 14220710 CAAAGACCACTGCAACCGCAAGAGC-AACCAGAAGAACCTGGGCACCATCCGCAGCTCTA 14220652
Query 255441 ACCTGTGCACCGAGATTACGTTGCACACGTCAGCGC---AAGAGGTGGCCGTTTGCAACT 255497
|||||||||||||||| ||| | || || |||| | |||||||| || ||||||
Sbjct 14220651 ACCTGTGCACCGAGAT--CGTCGAGTAC-TC-GCGCCCGATGAGGTGGCTGTGTGCAACC 14220596
Query 255498 TGGCGTC 255504
|||||||
Sbjct 14220595 TGGCGTC 14220589
Score = 95.1 bits (104), Expect = 4e-14
Identities = 154/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 256127 ATCGAGGAGCACGGACTGCGCAACTCGCAACGATTGGCGCCCATGCCAACCGCCAGCACC 256186
||| || ||||||| |||||||||||| | ||||||||||||| |||||||||||
Sbjct 14220167 ATCAAGCAGCACGGTGTGCGCAACTCGCTGCTTGTGGCGCCCATGCCCACCGCCAGCACG 14220108
Query 256187 GCTCAAATCCTGGGTAACGTGGAAAGCATCGAACCCCTGACTACCAACTTCTTCTCGCGC 256246
| || || ||||| ||| || || |||| ||| || ||||| ||| | |||
Sbjct 14220107 TCGCAGATTCTGGGCAACAACGAGTGCTTCGAGCCCTACACGTCCAACATCTACCAGCGT 14220048
Query 256247 CGCGTTCGCTCCGGCGAGTTCGCCGTGGTGAACCAGTACTTGGTGGACGACTTGGTACGA 256306
||||| | | ||||||||||| || || |||| | | || | ||| |||| |||
Sbjct 14220047 CGCGTGCTCGCCGGCGAGTTCCAGGTCGTCAACCCATGGCTCCTGAAGGACCTGGT-CGA 14219989
Query 256307 -CTCGGTCTGTGGAACGAGAAGATGCAACAACGCATAAT 256344
|| || ||||| ||| || ||| | | ||||| ||
Sbjct 14219988 GCTTGGCTTGTGGTCCGACAACATGAAGAACCGCATCAT 14219950
>seq12
Length=9596913
Score = 91.5 bits (100), Expect = 5e-13
Identities = 112/152 (74%), Gaps = 1/152 (1%)
Strand=Plus/Minus
Query 443718 GCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCCATCTTCTGGTT 443777
|| ||||| | || || || | || || ||||| |||| ||||||||||||||| |
Sbjct 6218679 GCCTTTGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTT-GCCTCCATCTTCTGGCT 6218621
Query 443778 GAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAGTCGGGACGA 443837
||| ||||| || || |||| || || ||||| ||||| || ||| ||| |||||
Sbjct 6218620 GAAGAAGCGCGGCCTGATGCCTGGCCTTACCTTCTCCAACGAGCTCATCTCTCGTGACGA 6218561
Query 443838 GGGTTTGCATTGCGACTTCGCCTGTCTTCTCT 443869
|||| |||| ||||| ||||| |||||||
Sbjct 6218560 GGGTCTGCACACGGACTTTGCCTGCCTTCTCT 6218529
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1588334371955600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |