Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017- 06-19] 80 sequences; 53,151,282 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1 316 2e-81 seq12 107 2e-18 >seq1 Length=15654088 Score = 316 bits (350), Expect = 2e-81 Identities = 533/768 (69%), Gaps = 20/768 (3%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||||||||| | || ||| || ||| || | ||| || | ||||||||| Sbjct 14221419 TCATGCGCGTCGCTGTCGGCATCTGGGGCGACAACATCGAGCGCGTGCTCGAGACGTACA 14221360 Query 53253 ACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTA 53309 || | ||| ||| |||||||| || |||||| | || || || |||||||| || | Sbjct 14221359 ACCTCATGTCGAGC---AAGTACTTCACCCACGCCTCTCCCACTCTCTTCAACGCCGGCA 14221303 Query 53310 CGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACG 53369 || || | ||| ||||| ||||||||||| | |||||||| ||| ||||| | Sbjct 14221302 CGCCCCAGGCCCAGCTGTCGTCGTGCTTCCTGGTCGACATGAAGGACGACAGCATCGATG 14221243 Query 53370 GCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG-- 53427 | |||||||| || ||||| |||||| ||||||||| | | || |||||||| Sbjct 14221242 GTATCTACGACACCCTCAAAACCTGTGCCATGATCTCCAAGATGGCCGGCGGTATCGGCC 14221183 Query 53428 ----TATCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCG 53483 ||||||| || |||| || | ||| | ||| || || |||||| Sbjct 14221182 TCAATATCCACCGCA------TCCGCGCCACGGGCTCCTACATCGCCGGCACCAACGGCA 14221129 Query 53484 TCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACC 53543 || | || |||||||| ||||| || || ||||||||||||||||| |||||| ||| Sbjct 14221128 CATCCAACGGCATCGTGCCCATGCTACGTGTTTTCAACAACACGGCCCGTTACGTCGACC 14221069 Query 53544 AGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACA 53603 ||||||| |||||| || | || |||||||| || |||||||||||||||||| Sbjct 14221068 AGGGTGGCAACAAGCGCCCCGGCGCCTTTGCCATCTATCTGGAGCCGTGGCACGCCGACG 14221009 Query 53604 TTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACC 53663 | | ||||| ||||| ||||| ||| || || | || ||||| ||| ||| |||| Sbjct 14221008 TGTTCGAGTTCCTCGACCTGCGCAAGAACCACGGCAAGGAGGAGATCCGCGCCCGCGACC 14220949 Query 53664 TGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGT 53723 | || || || ||||| || ||||| |||||| | ||| |||||| ||| || | Sbjct 14220948 TTTTCCTGGCCCTATGGATCCCAGACCTATTCATGAAGCGGGTTGAGAAGAACGGCGACT 14220889 Query 53724 GGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTCTACGGTGAGGAGTTT 53782 || || |||||||| ||||||||||| ||||| ||| || |||||| || ||||| Sbjct 14220888 GGACGCTCATGTGCCCCAACGAGTGCCCTGGCCTAGCAGACTG-CTACGGCGACGAGTTC 14220830 Query 53783 AACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGT 53842 | | |||| | ||||| | ||||| | |||| | ||||||||| Sbjct 14220829 GAGGCTTTGTACGAAAAGTACGAGCGTGAGGGCAAGGGCCGCAAGACGCTCAAGGCGCAA 14220770 Query 53843 GAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTAC 53902 || | ||| |||| |||||| || |||| ||||| || | || | |||| ||| Sbjct 14220769 AAGCTGTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGCAACCCCTTCATGCTGTAC 14220710 Query 53903 AAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATC 53950 || || |||| |||||||||||||||||| | ||| |||| Sbjct 14220709 AAAGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATC 14220662 Score = 158 bits (174), Expect = 1e-33 Identities = 308/452 (68%), Gaps = 6/452 (1%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || || ||||| || || |||||||||||||| | ||| || | || || ||||| | | Sbjct 7237580 CCAGTGCCGATACCGTCGGCACCGTTGACCAGGACCATAGGAATAACGGGTGCGTACACC 7237639 Query 151936 TCCGGCTCCA---CCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCC 151992 | ||||| | ||| || |||||||| | || | | ||| | | ||| Sbjct 7237640 TTGGGCTCAATAACCT--TG-CCGTCATCTACTTGGTGCTGTAGAACAGGCTCGTCCATG 7237696 Query 151993 GGATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCC 152052 | | ||| | || || | | || || ||| || ||||||||||| | |||||| Sbjct 7237697 GCAGAGAAAACGCGCCGCGCAAATGGTGACAGACGAGTAAAGATGTATCGAGCGCTGGCG 7237756 Query 152053 GCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGG 152112 ||||| ||||| | || || | || || | ||| |||||||||| ||| | | Sbjct 7237757 GCATCAGATCCACCGGAGAGGCGAGAACCGAAGTTGCCACTGGGCTCGAGGCAGTTCACG 7237816 Query 152113 TTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCA 152172 ||||| | || || |||||||||||||| ||||| || ||||| || ||| Sbjct 7237817 TTGTTAGACCCGACAAAATTCTGAGCCAAGCCGACAATGGTCTGCTGCAACGATGCCTCA 7237876 Query 152173 CCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCC 152232 |||||||| || || | |||||||| || ||| || ||||||| | |||||| ||||| Sbjct 7237877 CCGTGGTGGTAGGCGGCCTGCTCCGAGACGTAACCAGCCAACTCGACGACCTTCTTGTCC 7237936 Query 152233 GTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCG 152292 | ||||||| ||||| || ||| | || ||||||||||| || |||| ||| Sbjct 7237937 TTTACCAGGTTCCGCTTGAAACTCGCGAAGATGACCTTGCGCTGTCCAGGCTTCAGGCCG 7237996 Query 152293 TCCACCACGTGAGGAATCGAACGCTTGATGTC 152324 || | ||| ||| ||||| ||| || |||| Sbjct 7237997 TCGATCACTGAAGGTATCGAGCGCATGTTGTC 7238028 Score = 140 bits (154), Expect = 4e-28 Identities = 218/310 (70%), Gaps = 4/310 (1%) Strand=Plus/Plus Query 117293 GGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGC 117352 |||| || ||||| || ||||| |||| ||| || ||||| ||||| | || || Sbjct 7237721 GGTGACAGACGAGTAAAGATGTATCGAGCGCTGGCGGCATCAGATCCACCGGAGAGGCGA 7237780 Query 117353 GTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGA 117412 | |||||| | ||||| ||||| | | ||||| |||||| | || ||||| || ||| Sbjct 7237781 GAACCGAAGTTGCCACTGGGCTCGAGGCAGTTCACGTTGTTAGACCCGACAAAATTCTGA 7237840 Query 117413 GCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCC 117472 |||||| |||||| || || | |||||||| ||||| || || | ||||||| Sbjct 7237841 GCCAAGCCGACAATGGTCTGCTGCAACGATGCCTCACCGTGGTGGTAGGCGGCCTGCTCC 7237900 Query 117473 GCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAGGC 117530 | ||||| || |||| || | |||||| |||| | || ||||||| ||||| | Sbjct 7237901 GAGACGTAACCAGCCAACTCGACGACCTTCTTGTCCTTTAC--CAGGTTCCGCTTGAAAC 7237958 Query 117531 AGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAAC 117590 || | || ||||||||||| | |||||||| || || ||| ||| ||||| | Sbjct 7237959 TCGCGAAGATGACCTTGCGCTGTCCAGGCTTCAGGCCGTCGATCACTGAAGGTATCGAGC 7238018 Query 117591 GCTTGATGTC 117600 || || |||| Sbjct 7238019 GCATGTTGTC 7238028 Score = 140 bits (154), Expect = 4e-28 Identities = 544/838 (65%), Gaps = 24/838 (3%) Strand=Plus/Minus Query 55106 AAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCATCGACAAGAAT 55165 ||||| ||||| ||||| | || || ||| || || ||| | |||||||| || Sbjct 14220536 AAGCTGCACGAGGTGACCCAGGTCGTCGTTCGTAATCTTAACAAGATCATCGACGTCAAC 14220477 Query 55166 TACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCATCGCCATCGGT 55225 ||||||||| | | ||| || || |||||| || ||||||||||||| | | || Sbjct 14220476 TACTACCCGGTCCAGGAGGCTCGTAACAGCAACCTGCGCCACCGGCCCATCGGCCTAGGC 14220417 Query 55226 GTACAGGGCTTGGCCGACATCTTCATGATGCTCGGATTGCCCTTCGACTCGGAACCTGCT 55285 || ||||| ||||||| |||| | ||| | |||||||||| || ||| Sbjct 14220416 GTGCAGGGTCTGGCCGATGCCTTCCTAGCGCTGCGCCTGCCCTTCGAGTCTCCCGAGGCT 14220357 Query 55286 CGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGCGCTCGAGGAGTCGTG 55344 || || | ||| || | ||||| || | ||||||| || || || | ||||| Sbjct 14220356 CGCGAGCTCAACAAGCAGATCTTTGAGAC-CATCTACCACGCCGCCCTGACCGCCTCGTG 14220298 Query 55345 TCATCTGGCTAT-GAGCGAGGGGACCTACGAGACGTTCCGTGATTCGCCAGCTGACA-AG 55402 | ||||| |||| |||| |||||| ||| | | | ||||| | || | || Sbjct 14220297 CGAGCTGGCGCGCGAGC-AGGGCACCTACTCGACATACGAGGGCTCGCCTG-TGTCGCAG 14220240 Query 55403 GGACTTCTCCAGTTCGATCTATGG---GGCAAG---TCTGACCCCATG---TTTGACAAG 55453 || | || |||| ||| | ||| | |||| || || | | | | || | Sbjct 14220239 GGCATCCTGCAGTACGACATGTGGAACGTCAAGCCGTCGGAGCTCTGGGACTGGGAGTCG 14220180 Query 55454 TTGAAGCATGACATTCACTTGTGGGGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCA 55513 | ||| ||||| | | || | |||||||| ||||| |||||||| ||||| Sbjct 14220179 CTCAAGGCGGACATCAAGCAGCACGGTGTGCGCAACTCGCTGCTTGTGGCGCCCATGCCC 14220120 Query 55514 ACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGCCGTACACGACCAAC 55573 ||||| ||| | ||||| |||||||||||||| |||||||| |||||| ||||| Sbjct 14220119 ACCGCCAGCACGTCGCAGATTCTGGGCAACAACGAGTGCTTCGAGCCCTACACGTCCAAC 14220060 Query 55574 ATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAG 55633 ||||||| ||| || || || || ||||| | ||||| ||| | ||| Sbjct 14220059 ATCTACCAGCGTCGCGTGCTCGCCGGCGAGTTCCAGGTCGTCAACCCATGGCTCCTGAAG 14220000 Query 55634 GACCTGCAGAAGATCAACAAGTGGAACCCGCAGATCAAGA--CGGATATTGTGCGGAACG 55691 |||||| || | | |||| | | || |||| || || | || | | Sbjct 14219999 GACCTGGTCGAGCTTGGCTTGTGGTCCGACAACATGAAGAACCGCATCATCGCCG--AGG 14219942 Query 55692 GGGGGTCCGTCCAGA--ATCTGGAG-ATTCCTCTGCGTCTCAAGGAGATTTACCGGACGG 55748 | || ||| |||||| ||| || || || | | |||| | ||| ||||| Sbjct 14219941 GCGGCTCCATCCAGAACATCGCCAGCATCCCCGAGGATACCAAGCGCCTGTACAAGACGG 14219882 Query 55749 TGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCG 55808 | |||||||| | ||| | | | | ||| ||||| || || || | ||||| Sbjct 14219881 TCTGGGAGATCTCGCAGCGCACCGTCGTCCAGATGGCGGCTGACCGCGGCGCCTTCATCG 14219822 Query 55809 ACCAGTCCCAGTCTCTGAACATCTTCATG-GAGAATCCTTCACTGGCCAAGTTGAGCTCG 55867 |||| || ||||| || |||||| |||| | || || || ||| |||| | | || Sbjct 14219821 ACCAATCGCAGTCGCTCAACATCCACATGCGCGAGCCCACCA-TGGGCAAGATAACGTCT 14219763 Query 55868 ATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGACCC 55925 |||||||| ||| |||||| || ||||||||||| |||||||| ||||| |||| Sbjct 14219762 ATGCACTTCGCCGGCTGGAAGCTAGGCCTCAAGACGGGCATGTACTACCTGCGCACCC 14219705 Score = 93.3 bits (102), Expect = 5e-14 Identities = 235/348 (68%), Gaps = 16/348 (5%) Strand=Plus/Plus Query 152769 GTTGAGGACCAAGCCCTTGATGTGCGATCCGTCAAGATCCGCGTCGGTCATGATCATCAG 152828 ||||| || | ||||||||||| || || ||||| |||| |||||||||||| Sbjct 7238479 GTTGATGAGAAGCCCCTTGATGTGACTACCATCGTGATCCTGATCGGCCATGATCATCAG 7238538 Query 152829 ACGACCGTAGCGCAGGTCACGTAGTGAC-CCGTAGACCTTTCCATGTTGAAGCCCGAGGA 152887 ||||||| || ||| | | | ||| | |||| || || | || ||||||| Sbjct 7238539 GTGACCGTACCGTAGG-CTCTTGGTGTCGGTGTAGTGCTGCTTGTGCTTGAGACCGAGGA 7238597 Query 152888 TCTTTTTGAGGTTGGAAAATTCCTCATTATCGGTCACCTGTTTCACCGTGGCATCCCGAA 152947 || ||||| ||| | |||| || | | | ||| | || | |||||||| | Sbjct 7238598 ACTGTTTGATGTTCTGGATCTCCTTGTTCTTGAGGATCTGCTCGACGGGCGCATCCCGCA 7238657 Query 152948 CATTGCGCGGCTTTCCCCGGAGTGGAAACACGCCGAACGCGTTGCGG--CC--TACAACG 153003 | || || |||||| || || || || |||||| | ||| | ||| || ||| || Sbjct 7238658 CGTTCAGCATCTTTCCGCGTAGGGGGAAGACGCCG-ATGCGGTCCGGGTCCAGTACGGCG 7238716 Query 153004 CTCAGACCGGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGGTGATAATAAGCGTACAG 153063 | |||| |||| ||| || || | |||||||||||||| || | ||||| || || Sbjct 7238717 C---GACCAGCAACAGCCAGACCTCTGGCCGAGTCACCCTCCGTCAGGATAAGGGTGCAC 7238773 Query 153064 TCGTGAGACCGATG---AGTACCGGCCCAGTTGGCGTCGTCAAGCTTG 153108 |||| | ||| || ||||| ||| ||||||| ||| | |||||| Sbjct 7238774 TCGT--GGCCG-TGCCTGGTACCCGCCAAGTTGGCCTCGACCAGCTTG 7238818 >seq12 Length=9596913 Score = 107 bits (118), Expect = 2e-18 Identities = 291/435 (67%), Gaps = 14/435 (3%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || || || |||||||| || ||||||||||| || ||| |||||||||||||| Sbjct 6218252 TACTCGCCCACGCGCTTTTCGAAGAAGTTGGTCTTGCCGCCCAGAGAGATGTTCTCCATG 6218311 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAA--TAGGCTTCTCCCCAAACTGTGCCATGAGGC 74580 ||||||| ||||| ||| | ||| | | | | | |||| | | ||| ||||| Sbjct 6218312 AAGTCGAAGGGGTTGGATGCGCGGTAGACCTTGTCAT-TCCCGAGA-GCAACCAGGAGGC 6218369 Query 74581 GATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGC 74640 | || ||||| || | ||||||||| |||| || | |||||||| || | Sbjct 6218370 GGTCTGCCACGAACTCGATGTACTGCTTCATGAGGTTCGAGTTCATGCCGAGCAGCGCAC 6218429 Query 74641 ACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTG--GACAATCTT 74698 | ||||| |||||||| | ||||| ||| | || | || ||| | || |||| Sbjct 6218430 AAGGCAGGGCCTCGGTCAGGAACTCTTGCTCGATCTTGACAG--CATCGACGATGATCTC 6218487 Query 74699 GTGAATGTCTT--TGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAG-CGTCACGGCAAA 74755 | || || | | |||| || | ||| ||| ||| | || | || |||||| Sbjct 6218488 CTCGATCATTTGCTTGCTGGGCCGGTT--CTTCATGTGGGAGAAGAGAAGGCA-GGCAAA 6218544 Query 74756 CTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCAT 74815 ||| ||| || || || | || | || || || || | |||||||||||| Sbjct 6218545 GTCCGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTAAGGCCAGGCAT 6218604 Query 74816 AAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTC 74875 || || |||||||||| ||| ||||||| |||| ||| ||||||||||| || || Sbjct 6218605 CAGGCCGCGCTTCTTCAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTC 6218664 Query 74876 GACACACGCAAAGGC 74890 || |||||||| Sbjct 6218665 AACGGCGGCAAAGGC 6218679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215452784000