Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017- 06-19] 80 sequences; 53,151,282 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq45 114 1e-20 seq1 84.2 2e-11 >seq45 Length=5506958 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 29840 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAG 29899 || ||||| | |||||| | ||||||||| || ||| | || |||| || | |||| Sbjct 4038716 GGGAAGGGGCGGGGCTCGCGCTCGAGCTGGGTGCGCAGGGCGTCGACGTGGTCGACGTAG 4038657 Query 29900 ACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 29959 ||||| ||||| |||| | |||| | | || || | || || | |||| || Sbjct 4038656 ACGTGGGCGTCGCCCATGACGTGGGTCAGCGACCCGGGCACGAGGTCGCAGGCGTGGGCG 4038597 Query 29960 ATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCC 30019 | ||||| ||| || || |||||||| |||||||| ||||| || || || |||||||| Sbjct 4038596 AGCATGTGCGTCAGCAGCGAGTAGCTCGCGATGTTGAAGGGGACGCCCAGGCCCATGTCG 4038537 Query 30020 CCCGACCTCTGGTAGAGCTGACA 30042 | |||| |||||||||||| || Sbjct 4038536 CAGGACCGCTGGTAGAGCTGGCA 4038514 >seq1 Length=15654088 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/154 (75%), Gaps = 10/154 (6%) Strand=Plus/Plus Query 52761 CCAGAGATGGGCGACAAGTTTGCGTCGTTC-ACGGCGCAAAAGGG-GACGTGCGGAGCCG 52818 || ||| ||||||||||||| ||||| | ||||| |||||||| | ||| ||| | Sbjct 14101544 CCCGAGCTGGGCGACAAGTTCTCGTCGCGCCACGGC-CAAAAGGGCGTCGT-CGGCATCA 14101601 Query 52819 TCCTGACCCAGGAGGACATGCCCTTCGACAAGGAC---GGGGTGGTGCCCGACCTCATCA 52875 || | ||||||||||||||| || | ||||| || ||||||| ||| |||||| Sbjct 14101602 TCGTCGACCAGGAGGACATGCCGTT---CCAGGACTCGGGCCTGGTGCCTGACATCATCA 14101658 Query 52876 TCAACCCCCACGCCTTTCCCTCCAGGATGACCGT 52909 | ||||| |||| || |||||| | ||||| || Sbjct 14101659 TGAACCCGCACGGTTTCCCCTCCCGAATGACGGT 14101692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406310003847360