Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017-
06-19] 80 sequences; 53,151,282 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq45 114 1e-20
seq1 84.2 2e-11
>seq45
Length=5506958
Score = 114 bits (126), Expect = 1e-20
Identities = 147/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 29840 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAG 29899
|| ||||| | |||||| | ||||||||| || ||| | || |||| || | ||||
Sbjct 4038716 GGGAAGGGGCGGGGCTCGCGCTCGAGCTGGGTGCGCAGGGCGTCGACGTGGTCGACGTAG 4038657
Query 29900 ACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 29959
||||| ||||| |||| | |||| | | || || | || || | |||| ||
Sbjct 4038656 ACGTGGGCGTCGCCCATGACGTGGGTCAGCGACCCGGGCACGAGGTCGCAGGCGTGGGCG 4038597
Query 29960 ATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCC 30019
| ||||| ||| || || |||||||| |||||||| ||||| || || || ||||||||
Sbjct 4038596 AGCATGTGCGTCAGCAGCGAGTAGCTCGCGATGTTGAAGGGGACGCCCAGGCCCATGTCG 4038537
Query 30020 CCCGACCTCTGGTAGAGCTGACA 30042
| |||| |||||||||||| ||
Sbjct 4038536 CAGGACCGCTGGTAGAGCTGGCA 4038514
>seq1
Length=15654088
Score = 84.2 bits (92), Expect = 2e-11
Identities = 115/154 (75%), Gaps = 10/154 (6%)
Strand=Plus/Plus
Query 52761 CCAGAGATGGGCGACAAGTTTGCGTCGTTC-ACGGCGCAAAAGGG-GACGTGCGGAGCCG 52818
|| ||| ||||||||||||| ||||| | ||||| |||||||| | ||| ||| |
Sbjct 14101544 CCCGAGCTGGGCGACAAGTTCTCGTCGCGCCACGGC-CAAAAGGGCGTCGT-CGGCATCA 14101601
Query 52819 TCCTGACCCAGGAGGACATGCCCTTCGACAAGGAC---GGGGTGGTGCCCGACCTCATCA 52875
|| | ||||||||||||||| || | ||||| || ||||||| ||| ||||||
Sbjct 14101602 TCGTCGACCAGGAGGACATGCCGTT---CCAGGACTCGGGCCTGGTGCCTGACATCATCA 14101658
Query 52876 TCAACCCCCACGCCTTTCCCTCCAGGATGACCGT 52909
| ||||| |||| || |||||| | ||||| ||
Sbjct 14101659 TGAACCCGCACGGTTTCCCCTCCCGAATGACGGT 14101692
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406310003847360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |