Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017- 06-19] 80 sequences; 53,151,282 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq67 118 7e-22 seq23 93.3 3e-14 >seq67 Length=2709248 Score = 118 bits (130), Expect = 7e-22 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||| ||||| ||||||||||| || ||||| ||||| || || || || Sbjct 458686 AGACGAAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGACAGAGTGCGA 458745 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || || ||||| || ||||| || || ||||| || | |||||| Sbjct 458746 CCGTCCTCCAGCTGCTTGCCCGCAAAGATCAAACGTTGCTGATCCGGGGGGATACCCTCC 458805 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| || | || ||| | || |||||| ||| ||||||| || Sbjct 458806 TTGTCT-TGAATCTTCGACTTCACGTTGTCGATCGTGTCTGATGACTCGACTTCCAGCGT 458864 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| | ||| || || || |||||||| Sbjct 458865 GATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 458903 Score = 91.5 bits (100), Expect = 9e-14 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| ||||||||||| || ||||| || || ||||| || || |||| || || || Sbjct 458929 TGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAAAGAGTCCGACCGTCCTCGAGCTGC 458988 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || ||||| || || | ||||| ||||| || || | ||||||||||| ||| || Sbjct 458989 TTCCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTC-CTGAATCTT 459047 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | || || | || ||||| |||||| |||| ||| || || || || || Sbjct 459048 CGACTTGACATTGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATGGTCTTGCCCGT 459107 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 | ||||| || ||||||||||| Sbjct 459108 CAGGGTTTTGACGAAAATCTGCAT 459131 >seq23 Length=7462253 Score = 93.3 bits (102), Expect = 3e-14 Identities = 157/221 (71%), Gaps = 5/221 (2%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||| | || || ||||||||||| || ||||| || || || || || || Sbjct 7209988 AGACGCAGCACTAGGTGTAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGG 7209929 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || ||||| || ||||| || | ||||| ||||| || || | |||||| Sbjct 7209928 CCATCCTCCAGCTGTTTGCCCGCAAAGATCAGGCGCTGCTGGTCAGG-GGGATGCCCTCC 7209870 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGG 34666 ||||| |||| || | || || | || ||||| ||| |||||| || | || Sbjct 7209869 TTGTCCTGGATC-TTGGACTTGACATTGTCGATCGTGTCGCTCG-ACTCCACCTCAAGGG 7209812 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || || || || || | || |||||||| ||||||||| Sbjct 7209811 TGATAGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCATG 7209771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729293138640