Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017- 06-19] 80 sequences; 53,151,282 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq23 132 4e-26 seq67 95.1 1e-14 >seq23 Length=7462253 Score = 132 bits (146), Expect = 4e-26 Identities = 152/203 (75%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 |||||||||||||| || || || || || |||| || || || | || || |||||| Sbjct 7209973 TGTAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCCTCCAGCTGT 7209914 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||||||||| || || ||||||||||| | ||| | || ||| |||||| ||| || Sbjct 7209913 TTGCCCGCAAAGATCAGGCGCTGCTGGTCAG-GGGGATGCCCTCCTTGTCCTGGATCTTG 7209855 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 |||| | | | ||| |||||||||||||| || | |||||| | || ||||| Sbjct 7209854 GACTTGACATTGTCGATCGTGTCGCTCGACTCCACCTCAAGGGTGATAGTCTTGCCCGTG 7209795 Query 39262 AGCGTTTTAACAAAGATTTGCAT 39284 || || || |||||||| ||||| Sbjct 7209794 AGGGTCTTCACAAAGATCTGCAT 7209772 >seq67 Length=2709248 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || |||||||| || || || || ||||| | || || || |||| || Sbjct 458694 CACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGACAGAGTGCGACCGTCCTC 458753 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||||||||| || | ||| ||||| || | ||| | | ||| ||||| Sbjct 458754 CAGCTGCTTGCCCGCAAAGATCAAACGTTGCTGATCCGGGGGGATACCCTCCTTGTCTTG 458813 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 || ||| || | ||| | | | ||| || ||||| || |||| |||||| | | Sbjct 458814 AATCTTCGACTTCA-CGTTGTCGATCGTGTCTGATGACTCGACTTCCAGCGTGATGGTCT 458872 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || ||||| || || ||||| ||||| Sbjct 458873 TGCCGGTGAGCGTCTTGACGAAGATCTGCAT 458903 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || |||||||| || || || || || |||| ||| || || |||| || ||||| Sbjct 458929 TGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAAAGAGTCCGACCGTCCTCGAGCTGC 458988 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || || || || || ||||||||||||| || | | ||| |||||| || ||| Sbjct 458989 TTCCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTC 459048 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 |||| | | | || || |||||||| |||| ||||| | || |||||| Sbjct 459049 GACTTGACATTGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATGGTCTTGCCCGTC 459108 Query 39262 AGCGTTTTAACAAAGATTTGCAT 39284 || ||||| || || || ||||| Sbjct 459109 AGGGTTTTGACGAAAATCTGCAT 459131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429545181193040