Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017-
06-19] 80 sequences; 53,151,282 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq23 132 4e-26
seq67 95.1 1e-14
>seq23
Length=7462253
Score = 132 bits (146), Expect = 4e-26
Identities = 152/203 (75%), Gaps = 1/203 (0%)
Strand=Plus/Minus
Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141
|||||||||||||| || || || || || |||| || || || | || || ||||||
Sbjct 7209973 TGTAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCCTCCAGCTGT 7209914
Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201
||||||||||| || || ||||||||||| | ||| | || ||| |||||| ||| ||
Sbjct 7209913 TTGCCCGCAAAGATCAGGCGCTGCTGGTCAG-GGGGATGCCCTCCTTGTCCTGGATCTTG 7209855
Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261
|||| | | | ||| |||||||||||||| || | |||||| | || |||||
Sbjct 7209854 GACTTGACATTGTCGATCGTGTCGCTCGACTCCACCTCAAGGGTGATAGTCTTGCCCGTG 7209795
Query 39262 AGCGTTTTAACAAAGATTTGCAT 39284
|| || || |||||||| |||||
Sbjct 7209794 AGGGTCTTCACAAAGATCTGCAT 7209772
>seq67
Length=2709248
Score = 95.1 bits (104), Expect = 1e-14
Identities = 149/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || || |||||||| || || || || ||||| | || || || |||| ||
Sbjct 458694 CACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGACAGAGTGCGACCGTCCTC 458753
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||| ||||||||||| || | ||| ||||| || | ||| | | ||| |||||
Sbjct 458754 CAGCTGCTTGCCCGCAAAGATCAAACGTTGCTGATCCGGGGGGATACCCTCCTTGTCTTG 458813
Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
|| ||| || | ||| | | | ||| || ||||| || |||| |||||| | |
Sbjct 458814 AATCTTCGACTTCA-CGTTGTCGATCGTGTCTGATGACTCGACTTCCAGCGTGATGGTCT 458872
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| || || ||||| || || ||||| |||||
Sbjct 458873 TGCCGGTGAGCGTCTTGACGAAGATCTGCAT 458903
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141
|| || |||||||| || || || || || |||| ||| || || |||| || |||||
Sbjct 458929 TGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAAAGAGTCCGACCGTCCTCGAGCTGC 458988
Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201
|| || || || || || ||||||||||||| || | | ||| |||||| || |||
Sbjct 458989 TTCCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTC 459048
Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261
|||| | | | || || |||||||| |||| ||||| | || ||||||
Sbjct 459049 GACTTGACATTGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATGGTCTTGCCCGTC 459108
Query 39262 AGCGTTTTAACAAAGATTTGCAT 39284
|| ||||| || || || |||||
Sbjct 459109 AGGGTTTTGACGAAAATCTGCAT 459131
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429545181193040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |