Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017- 06-19] 80 sequences; 53,151,282 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1 104 3e-17 >seq1 Length=15654088 Score = 104 bits (114), Expect = 3e-17 Identities = 271/413 (66%), Gaps = 8/413 (2%) Strand=Plus/Plus Query 77955 CCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATA 78014 |||||||| || || |||||||| | | |||||| || | | || ||| || ||||| Sbjct 14220858 CCAGGGCACTCGTTGGGGCACATGAGCGTCCAGTCGCCGTTCTTCTCAACCCGCTTCATG 14220917 Query 78015 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCT 78074 || || || || |||||||| || | || || || |||| | || || || || Sbjct 14220918 AATAGGTCTGGGATCCATAGGGCCAGGAAAAGGTCGCGGGCGCGGATCTCCTCCTTGCCG 14220977 Query 78075 GTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATT 78134 ||||| || ||||| ||||| | | || | ||||| || || ||||| || Sbjct 14220978 TGGTTCTTGCGCAGGTCGAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAGATAGATG 14221037 Query 78135 GCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAA 78194 || | | || || || || || || ||||| || | || | ||| ||||| || || Sbjct 14221038 GCAAAGGCGCCGGGGCGCTTGTTGCCACCCTGGTCGACGTAACGGGCCGTGTTGTTGAAA 14221097 Query 78195 ACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCA 78254 || | | ||| || | || ||||| ||||| || || || || | || || || Sbjct 14221098 ACACGTAGCATGGGCACGATGCCGTTGGATGTGCCGTTGGTGCCGGCGATGTAGGAGCCC 14221157 Query 78255 CTTGCGCGAATATTACTAATGGATATC----CCTATTCCTCCTGCCATCTTAGATATTAG 78310 | ||||| || ||||||| || || || || |||||||| || || | Sbjct 14221158 GTGGCGCGGATGCGG----TGGATATTGAGGCCGATACCGCCGGCCATCTTGGAGATCAT 14221213 Query 78311 AGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGT 78363 || || ||| | || ||||||||||| || || ||||| ||| |||||| Sbjct 14221214 GGCACAGGTTTTGAGGGTGTCGTAGATACCATCGATGCTGTCGTCCTTCATGT 14221266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668105331200