Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017- 06-19] 80 sequences; 53,151,282 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq67 176 9e-39 seq23 174 3e-38 seq1 125 1e-23 >seq67 Length=2709248 Score = 176 bits (194), Expect = 9e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||| ||||| |||| || | ||||| || || ||||||||||| || | Sbjct 458677 CCACCGCGCAGACGAAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGAC 458736 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| || ||||| || || || || ||||||||||||||||| || || || Sbjct 458737 AGAGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAAACGTTGCTGATCCGGGGGG 458796 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||||||||| ||||| | || ||| | ||||| ||||| || | |||||| Sbjct 458797 ATACCCTCCTTGTCTTGAATCTTCGACTTCACGTTGTCGATCGTGTCTGATGACTCGACT 458856 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || || | ||||| ||||| |||||||| Sbjct 458857 TCCAGCGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 458903 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| ||||| || || || || | ||||| || || |||||||||||||| | Sbjct 458904 ACCGCCACGGAGGCGGAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGA 458963 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || || ||||| || || |||||||| ||||||| || || ||||| || Sbjct 458964 AAGAGTCCGACCGTCCTCGAGCTGCTTCCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGG 459023 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| || ||||| | || || | ||||| |||||||||| || || Sbjct 459024 GATACCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTGTCCGAAGACTCCAC 459083 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| ||||| ||||||| || || ||||| |||||||| Sbjct 459084 CTCCAAGGTGATGGTCTTGCCCGTCAGGGTTTTGACGAAAATCTGCAT 459131 Score = 150 bits (166), Expect = 4e-31 Identities = 174/229 (76%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-C 282931 || |||||||| || || || || || | || || || || ||||||||||| | | Sbjct 458449 CCGCCACGCAGACGCAGCACTAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCCGAC 458508 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || ||||||||||| || || || || || ||||||| || || ||||| || Sbjct 458509 AAG-GTACGGCCATCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGAGG 458567 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 || |||||||| || |||||| ||||| |||||| |||| || || || || | ||||| Sbjct 458568 GATGCCCTCCTTATCCTGGATC-TTGCTCTTTACGTTATCAATCGTATCGGATGATTCGA 458626 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||| ||||| || || || ||||| ||||| ||||| |||||||| Sbjct 458627 CTTCGAGCGTGATGGTTTTTCCAGTCAAGGTCTTCACGAAGATCTGCAT 458675 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| ||||| || || || || | ||| |||||||||||||||||||| | Sbjct 459132 ACCTCCACGGAGGCGGAGGACGAGGTGCAGCGTCGACTCTTTTTGGATGTTGTAGTCCGA 459191 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||| ||||| ||||| || || || ||||| | || || ||||| || Sbjct 459192 GAGGGTCCGGCCGTCCTCGAGTTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCGGGAGG 459251 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| | || ||| | ||||| || || |||| || || Sbjct 459252 GATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCGGAAGACTCCAC 459311 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCA 283077 ||||| ||||| ||||| ||||||| Sbjct 459312 CTCGAGGGTGATGGTCTTGCCCGTCA 459337 >seq23 Length=7462253 Score = 174 bits (192), Expect = 3e-38 Identities = 176/228 (77%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || || || |||| |||||| || || |||||||||||||| | Sbjct 7209998 ACCACCACGCAGACGCAGCACTAGGTGTAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGA 7209939 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||||||||| || ||||| || |||||||||| || || |||||| || Sbjct 7209938 CAGCGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAAGATCAGGCGCTGCTGGTCA-GGGG 7209880 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| | || || | ||||| ||||| | || || Sbjct 7209879 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGCTCGACTCCAC 7209820 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| ||||| | ||||| || || |||||||| Sbjct 7209819 CTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 7209772 >seq1 Length=15654088 Score = 125 bits (138), Expect = 1e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | || || ||||||||||| || || || || || || || Sbjct 11956324 TTCTGGATGTTGTAGTCGGACAGAGTCCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATG 11956383 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | ||| || ||||| || || ||||||||||| |||||||| | || || | ||| Sbjct 11956384 AGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCG 11956443 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || |||||||| | ||||| || |||||||| ||||| || || | ||||| ||||| Sbjct 11956444 ATCGTGTCCGAGGACTCGACCTCCAGAGTGATGGTCTTGCCAGTAAGGGTCTTCACGAA 11956502 Score = 89.7 bits (98), Expect = 1e-12 Identities = 122/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 315667 ACCCCACCTCCGAAATTCTTAAGCGCCTCTGCCATGGCACCGAGACTCTCGCGGTCCACA 315726 || ||||| |||| ||||| | |||| | || ||||||||| || ||||| | Sbjct 6001767 ACACCACCCTCGAACTTCTTCAAGGCCTTGGACAGGGCACCGAGCGAGTCACGGTCAAGG 6001826 Query 315727 AAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTTGTTGCCATAGAGC-GGCGCCGAT 315785 ||||||||||||| ||||| ||||| | |||||| | |||||| |||| |||| ||| Sbjct 6001827 TAGTTGGTCGGCTCGTCAAGGACGATCAGGTGGGGACGCTGCCAT-GAGCAGGCGGCGAG 6001885 Query 315786 AACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGATGCGAGAATG 315833 || | ||| | || ||||| ||||| ||||| ||||| || || Sbjct 6001886 GACAACCTTGACACGCTGACCACCGGACAGACCACGCATGCGCGAGTG 6001933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738127092320