Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017- 06-19] 80 sequences; 53,151,282 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq67 156 3e-33 seq23 149 5e-31 seq1 98.7 7e-16 >seq67 Length=2709248 Score = 156 bits (172), Expect = 3e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | ||||| ||| || ||||||||||| |||||||||||||| Sbjct 458673 CATGCCACCGCGCAGACGAAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATC 458732 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| |||| ||||||||||| || |||||||||||||| |||||||| | Sbjct 458733 CGACAGAGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAAACGTTGCTGATCCGG 458792 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | ||| ||||| || |||||| ||||| | | || ||||| | || || Sbjct 458793 GGGGATACCCTCCTTGTCTTGAATCTTCGACTTCACGTTGTCGATCGTGTCTGATGACTC 458852 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||| ||| || ||||| || ||||| ||||| |||||||| ||||| Sbjct 458853 GACTTCCAGCGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 458903 Score = 150 bits (166), Expect = 1e-31 Identities = 161/211 (76%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || ||||||||||| ||||||||||| |||| || || |||| || Sbjct 458923 ACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAAAGAGTCCGACCGTCCTCG 458982 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||||||||| ||||||| |||||||| || | ||| | ||| ||||| ||| Sbjct 458983 AGCTGCTTCCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGA 459042 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| ||| || ||| | |||||||| | || |||||||||| || || |||| Sbjct 459043 ATCTTCGACTTGACATTGT--CGATGGTGTCCGAAGACTCCACCTCCAAGGTGATGGTCT 459100 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| ||||| || ||||| || ||||| Sbjct 459101 TGCCCGTCAGGGTTTTGACGAAAATCTGCAT 459131 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 44110 TCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG- 44168 ||| || | ||| | || ||| ||||| || || |||||| || |||||||| || | Sbjct 458448 TCCGCCACGCAGACGCAGCACTAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCCGA 458507 Query 44169 CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228 | || | || | || ||||||||||| || || ||||||| |||||||| || | || Sbjct 458508 CAAGGTACGGC-CATCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGAG 458566 Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | | || ||||| ||| ||||| ||| | | | || || |||| ||||| | Sbjct 458567 GGATGCCCTCCTTATCCTGGATCTTGCTCTTTACGTTATCAATCGTATCGGATGATTCGA 458626 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || | ||| || || ||||| || | ||||||||||||||| |||||| Sbjct 458627 CTTCGAGCGTGATGGTTTTTCCAGTCAAGGTCTTCACGAAGATCTGCATG 458676 Score = 86.0 bits (94), Expect = 5e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| ||||| ||| |||||||||||||| || | ||| || |||| || Sbjct 459151 ACGAGGTGCAGCGTCGACTCTTTTTGGATGTTGTAGTCCGAGAGGGTCCGGCCGTCCTCG 459210 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| || || ||||| | |||||||| || | ||| | || ||||| ||| Sbjct 459211 AGTTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGG 459270 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | ||||| |||| || |||||||| | || || ||||| Sbjct 459271 ATCTTGGACTTGACGTTGTCGATGGTATCGGAAGACTCCACCTCGAGGGTGATGGTCTTG 459330 Query 44309 CCCGT 44313 ||||| Sbjct 459331 CCCGT 459335 >seq23 Length=7462253 Score = 149 bits (164), Expect = 5e-31 Identities = 174/232 (75%), Gaps = 5/232 (2%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||| ||||| |||||||||||||| ||||||||||| |||| Sbjct 7209997 CCACCACGCAGACGCAGCACTAGGTGTAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAC 7209938 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || |||||||| || || |||||||||| |||||||| || | || Sbjct 7209937 AGCGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAAGATCAGGCGCTGCTGGTCAG-GGGG 7209879 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | || ||||| ||| ||||| ||| || ||| | || |||||| || |||| Sbjct 7209878 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT--CGATCGTGTCGCTCGACTCCA 7209821 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 |||| | || || ||||| ||||||||||||||||| ||||| |||||||| Sbjct 7209820 CCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGAT 7209769 >seq1 Length=15654088 Score = 98.7 bits (108), Expect = 7e-16 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| |||| || || | || || |||||||| || || || | Sbjct 11956322 CCTTCTGGATGTTGTAGTCGGACAGAGTCCGGCCATCCTCAAGCTGCTTGCCAGCGAAAA 11956381 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC 44267 | | ||||||||| || | ||| | || ||||| ||| ||||| ||||| | Sbjct 11956382 TGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGT 11956441 Query 44268 CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGA 44327 | || ||||| | ||| || ||||||| || || ||||| || || ||||||||||||| Sbjct 11956442 CGATCGTGTCCGAGGACTCGACCTCCAGAGTGATGGTCTTGCCAGTAAGGGTCTTCACGA 11956501 Query 44328 AG 44329 || Sbjct 11956502 AG 11956503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990049009360