Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017- 06-19] 80 sequences; 53,151,282 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq67 159 8e-34 >seq67 Length=2709248 Score = 159 bits (176), Expect = 8e-34 Identities = 148/188 (79%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||| || || || || || |||||| | |||||||| || ||| Sbjct 459128 CAGATTTTCGTCAAAACCCTGACGGGCAAGACCATCACCTTGGAGGTGGAGTCTTCGGAC 459069 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| |||||||||||||| || || |||||||| |||||||| Sbjct 459068 ACCATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAGCAG 459009 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| || || |||||||| |||| || ||| || Sbjct 459008 CGCCTGATCTTCGCCGGGAAGCAGCTCGAGGACGGTCGGACTCTTTCCGACTACAACATC 458949 Query 178104 CAAAAAGA 178111 || || || Sbjct 458948 CAGAAGGA 458941 Score = 145 bits (160), Expect = 2e-29 Identities = 143/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || ||||||||||||||||| || || |||||||| |||||||| Sbjct 459335 ACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTCCGATACCATCGACAACGTCAAGTCC 459276 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || ||||||||||| |||||||| || || |||||||| || || Sbjct 459275 AAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGCCTCATCTTCGCTGGCAAG 459216 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || ||||| || || |||| || | || || ||| |||||||||| || || ||||| Sbjct 459215 CAACTCGAGGACGGCCGGACCCTCTCGGACTACAACATCCAAAAAGAGTCGACGCTGCAC 459156 Query 178125 CTTGT 178129 || || Sbjct 459155 CTCGT 459151 Score = 118 bits (130), Expect = 3e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || | || |||||||| ||||| ||||| || ||| || || Sbjct 458672 CAGATCTTCGTGAAGACCTTGACTGGAAAAACCATCACGCTCGAAGTCGAATCATCCGAT 458613 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || ||||| ||||| || || || ||||||||||||||||| Sbjct 458612 ACGATTGATAACGTAAAGAGCAAGATCCAGGATAAGGAGGGCATCCCTCCGGACCAGCAG 458553 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || || |||||||| || || ||||| || ||||| | || |||| | || || ||| | Sbjct 458552 CGCCTGATCTTCGCGGGCAAGCAGCTGGAGGATGGCCGTAC-CTTGTCGGACTACAACAT 458494 Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 458493 TCAGAAGGAGTCGACTCTCCACCTAGT 458467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203729966175520