Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017-
06-19] 80 sequences; 53,151,282 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq23 163 3e-35
seq67 154 1e-32
seq12 100 3e-16
seq1 96.9 3e-15
>seq23
Length=7462253
Score = 163 bits (180), Expect = 3e-35
Identities = 178/233 (76%), Gaps = 5/233 (2%)
Strand=Plus/Minus
Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692
|| || || || ||||| | ||| || || ||||||||||||||||| ||||| ||||||
Sbjct 7210000 CCACCACCACGCAGACGCAGCACTAGGTGTAGCGTGCTCTCCTTCTGGATGTTGTAGTCG 7209941
Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752
|| || ||||| | || || ||||| ||||| || || ||||||||||| ||||| | |
Sbjct 7209940 GACAGCGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAAGATCAGGCGCTGCTGGTCAG-G 7209882
Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACT 41810
|| | || |||||||||| ||| || ||| || | || | |||||||||||||
Sbjct 7209881 GGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATCGTGTCGCTCGACT 7209824
Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||||||| | || || || || ||||| || ||||| || || |||||||||
Sbjct 7209823 CCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCATG 7209771
>seq67
Length=2709248
Score = 154 bits (170), Expect = 1e-32
Identities = 175/230 (76%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
||||| || || || | || || || || |||||||||||||| ||||| ||||||||
Sbjct 458905 CCGCCACGGAGGCGGAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAA 458964
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || |||| ||||||||||| |||||||| ||||||||||| ||||| | ||
Sbjct 458965 AGAGTCCGACCGTCCTCGAGCTGCTTCCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGG 459024
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCC 41812
| | |||||||||| ||| | || | ||| || | || | ||||| ||||||
Sbjct 459025 ATACCCTCCTTGTCC-TGAATCTTCGACTTGACATTGTCG--ATGGTGTCCGAAGACTCC 459081
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||||| || || || || |||||||| || || ||||||||||||||
Sbjct 459082 ACCTCCAAGGTGATGGTCTTGCCCGTCAGGGTTTTGACGAAAATCTGCAT 459131
Score = 134 bits (148), Expect = 1e-26
Identities = 171/230 (74%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| ||||| ||||| | ||||| || || |||||||||||||| ||||| || || ||
Sbjct 458676 GCCACCGCGCAGACGAAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGA 458735
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| ||||| |||| || ||||||||||| || || |||| || || || |||| |||
Sbjct 458736 CAGAGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAAACGTTGCTGATCCGGGGG 458795
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812
| | |||||||| | ||| | || | |||| ||| | | | ||||| |||||
Sbjct 458796 GATACCCTCCTTGT-CTTGAATCTTCGACTTC-ACGTTGTCGATCGTGTCTGATGACTCG 458853
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| |||| ||| || || || || || |||||||| ||||| ||||||||
Sbjct 458854 ACTTCCAGCGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 458903
Score = 127 bits (140), Expect = 2e-24
Identities = 167/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
||||| || ||||| | ||| || || || || ||||||||||||||| ||||| ||
Sbjct 458449 CCGCCACGCAGACGCAGCACTAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCCGAC 458508
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| ||| || | || || ||||||||||| ||||| ||||||||||| ||||||| ||
Sbjct 458509 AAGGTACGGCCATCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGAGGG 458568
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || |||||| ||| ||| || ||| ||| | | || ||| || || ||
Sbjct 458569 ATGCCCTCCTTATCCTGGATCTTGCTCTT-TACGTTATCAATCGTATCGGATGATTCGAC 458627
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|| | ||| || ||||| || |||| ||||| ||||| |||||||||
Sbjct 458628 TTCGAGCGTGATGGTTTTTCCAGTCAAGGTCTTCACGAAGATCTGCATG 458676
Score = 104 bits (114), Expect = 2e-17
Identities = 148/206 (72%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | || || |||||||| ||| || || ||||| ||||| |||
Sbjct 459133 CCTCCACGGAGGCGGAGGACGAGGTGCAGCGTCGACTCTTTTTGGATGTTGTAGTCCGAG 459192
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || |||| ||||| |||||||| ||||| || |||||||| ||||| | ||
Sbjct 459193 AGGGTCCGGCCGTCCTCGAGTTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCGGGAGGG 459252
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | |||||||||| ||| || ||| | || | | | || ||| ||||||||
Sbjct 459253 ATTCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATGGTATCGGAAGACTCCAC 459311
Query 41815 CTCCACCGTTATCGTTTTACCCGTCA 41840
||| | || || || || |||||||
Sbjct 459312 CTCGAGGGTGATGGTCTTGCCCGTCA 459337
>seq12
Length=9596913
Score = 100 bits (110), Expect = 3e-16
Identities = 90/113 (80%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 85800 CGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTC 85859
|| ||||| || || |||||||||||| ||||||| |||||| |||||| || |||
Sbjct 4563168 CGCATCGCGCCCCGGTCCGGCCTCGCCGCCAAGCACTTCATCGACACGGGCGCGGGCGTC 4563109
Query 85860 ATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACGGCGA 85912
|||||||||||||||||||| | |||| | | ||||||||||||| |||
Sbjct 4563108 ATCGACGCCGACTACCGCGGCCAGGTCAAGGTGCTGCTCTTCAACCACGCCGA 4563056
>seq1
Length=15654088
Score = 96.9 bits (106), Expect = 3e-15
Identities = 132/182 (73%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
||||||| ||||| |||||||| || || || | || || ||||||||||| ||||| |
Sbjct 11956322 CCTTCTGGATGTTGTAGTCGGACAGAGTCCGGCCATCCTCAAGCTGCTTGCCAGCGAAAA 11956381
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792
| || ||||| ||||| | || | || |||||||||| ||| || |||| || |
Sbjct 11956382 TGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTC-ACATTG 11956440
Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851
| | ||||| ||||| ||||||| || || || || || || || ||||| |||
Sbjct 11956441 TCGATCGTGTCCGAGGACTCGACCTCCAGAGTGATGGTCTTGCCAGTAAGGGTCTTCACG 11956500
Query 41852 AA 41853
||
Sbjct 11956501 AA 11956502
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462303537696000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |