Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geosmithia_20flava_20[genbank_20GCA_5F900188565.1_202017-06-24] 1,819 sequences; 29,823,260 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1774 132 6e-26 seq1475 104 3e-17 seq805 96.9 4e-15 >seq1774 Length=381457 Score = 132 bits (146), Expect = 6e-26 Identities = 152/199 (76%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||||||||| || || ||||| |||| ||| || || |||| || |||||||||||| Sbjct 142539 GTGCTCTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCGTCCTCGAGCTGCTTACCA 142480 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTT 43105 || || || || ||||||||||| | || | || |||||||||| ||| | || | || Sbjct 142479 GCAAAGATAAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC-TGAATCTTCGACTT 142421 Query 43106 GAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCG 43164 || ||| | | | |||||||| |||||||| |||| || || || || ||||| || | Sbjct 142420 GA-CGTTGTCAATAGTGTCGCTAGATTCCACCTCGAGAGTAATCGTCTTTCCCGTCAGGG 142362 Query 43165 TCTTTACAAAGATTTGCAT 43183 |||| || || || ||||| Sbjct 142361 TCTTGACGAAAATCTGCAT 142343 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||| |||| ||| || || | || || |||||||| || ||||| Sbjct 142306 CTCCTTCTGAATGTTGTAGTCAGACAGCGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAA 142247 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | || |||||||||| ||| || |||| ||| Sbjct 142246 GATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 142188 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || || ||| || || |||| ||||||||| ||||| || | |||||| | Sbjct 142187 TGTCAATAGTATCCGACGACTCGACCTCGAGCGTGATGGTCTTGCCGGTCAACGTCTTGA 142128 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 142127 CGAAGATCTGCAT 142115 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | ||||| || | || || |||||||| ||||| || Sbjct 142078 CTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAA 142019 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | || |||||||||| ||| || |||| ||| Sbjct 142018 AATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 141960 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| ||| || || || | |||||||| ||||| || || ||||| | Sbjct 141959 TGTCGATGGTGTCCGACGACTCAACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGA 141900 Query 43171 CAAAGATTTGCAT 43183 ||||||| ||||| Sbjct 141899 CAAAGATCTGCAT 141887 Score = 96.9 bits (106), Expect = 4e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||||||||| || || ||||| || | ||||| || |||| || |||||||| ||| Sbjct 141855 GTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCCTCGAGCTGCTTGCCA 141796 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106 || || ||||| ||||||||||| | || | || |||||||||| ||| || || Sbjct 141795 GCAAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTC 141736 Query 43107 AGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 43159 | | | | |||||| || || || |||| |||||||| ||||| || Sbjct 141735 ACATTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGT 141683 >seq1475 Length=277423 Score = 104 bits (114), Expect = 3e-17 Identities = 142/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || |||||| || | || || |||||||| ||||| || Sbjct 220619 CTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAA 220560 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | | |||||||||| ||| || |||| ||| Sbjct 220559 GATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 220501 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || ||||| |||| ||||| || || ||||| || ||||| | Sbjct 220500 TGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTCCCCGTAAGGGTCTTGA 220441 Query 43171 CAAAGATTTGCATTTT 43186 | ||||| ||||| || Sbjct 220440 CGAAGATCTGCATCTT 220425 >seq805 Length=824856 Score = 96.9 bits (106), Expect = 4e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||| |||| ||| |||||| || || ||||| || | ||| || || |||| || Sbjct 371882 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCA 371823 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| || || || || || ||||||||||| | || | || |||||||||| | Sbjct 371822 AGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGG 371763 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 || || |||| | | | ||||| || || || |||| |||||||| ||| Sbjct 371762 ATCTTGGACTTGACATTGTCAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTG 371703 Query 43155 CCCGTTAGCGTCTTTACAAAG 43175 ||||| || ||||| || ||| Sbjct 371702 CCCGTCAGGGTCTTCACGAAG 371682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571804598297320