Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geosmithia_20flava_20[genbank_20GCA_5F900188565.1_202017-06-24] 1,819 sequences; 29,823,260 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1774 125 5e-24 seq805 102 5e-17 seq1475 91.5 1e-13 >seq1774 Length=381457 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | || || ||||| | || || ||||| ||||||||||| ||| Sbjct 142341 CCACCGCGCAGACGAAGGACAAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCAGAC 142282 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| | || || | |||||| || ||||| || || ||||||||||| ||| Sbjct 142281 AGCGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGA 142222 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | | || | ||| | ||| ||||| Sbjct 142221 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATAGTATCCGACGACTCGACC 142162 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||||||| |||||||| | || || || ||||||||||| Sbjct 142161 TCGAGCGTGATGGTCTTGCCGGTCAACGTCTTGACGAAGATCTGCAT 142115 Score = 123 bits (136), Expect = 2e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||||||||| || ||| | || || | ||||||||| || ||| Sbjct 142077 TCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAA 142018 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || ||||||||||| ||| | || ||||||||| ||||| ||| | | | Sbjct 142017 ATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG 141958 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | ||| || || |||| |||||||| ||||||||||| || || ||| Sbjct 141957 TCGATGGTGTCCGACGACTCAACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACA 141898 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 141897 AAGATCTGCAT 141887 Score = 113 bits (124), Expect = 3e-20 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || || || ||||| |||||||||||||| || |||| |||| Sbjct 141870 AGAACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCC 141811 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| || || ||||| ||||||||||| || | || ||||||||| Sbjct 141810 TCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 141751 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | | || | |||| || || || || | |||||||| Sbjct 141750 TGGATCTTCGACTTCACATTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTGATGGTC 141691 Query 34358 TTGCCGGTGA 34367 |||||||||| Sbjct 141690 TTGCCGGTGA 141681 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | || |||||||| | ||| || || ||||| ||||||||||| ||| Sbjct 142569 CCGCCACGGAGACGGAGGACCAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGAC 142510 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| || | |||||| || || || || || ||||||||||| || Sbjct 142509 AGGGTGCGACCGTCCTCGAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCAGGAGGG 142450 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | | || | ||| | ||||| || Sbjct 142449 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATAGTGTCGCTAGATTCCACC 142390 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || || || || || || || || || || || |||||||| Sbjct 142389 TCGAGAGTAATCGTCTTTCCCGTCAGGGTCTTGACGAAAATCTGCAT 142343 >seq805 Length=824856 Score = 102 bits (112), Expect = 5e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || || ||||| ||||||||||||||||| ||| |||| Sbjct 371885 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCC 371826 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || || || || || ||||||||||| ||| | || ||||||||| Sbjct 371825 TCAAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 371766 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | | || | || | || ||||| || | |||||||| Sbjct 371765 TGGATCTTGGACTTGACATTGTCAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTC 371706 Query 34358 TTGCCGGTGAGAGTTTTCACAAAG 34381 ||||| || || || ||||| ||| Sbjct 371705 TTGCCCGTCAGGGTCTTCACGAAG 371682 >seq1475 Length=277423 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | ||| || ||||| |||||||||||| ||| ||| | || Sbjct 220639 AGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCC 220580 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| || || || || ||||||||||| ||| | | ||||||||| Sbjct 220579 TCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCC 220520 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | |||| || || || || | ||||| || Sbjct 220519 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTC 220460 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || || || || || |||||||||||| Sbjct 220459 TTCCCCGTAAGGGTCTTGACGAAGATCTGCATC 220427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323064837796640