Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geosmithia_20flava_20[genbank_20GCA_5F900188565.1_202017-06-24] 1,819 sequences; 29,823,260 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq857 136 5e-27 seq1461 105 9e-18 >seq857 Length=1029652 Score = 136 bits (150), Expect = 5e-27 Identities = 454/700 (65%), Gaps = 16/700 (2%) Strand=Plus/Plus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 || || || || || || ||||| | | ||| || || | | | || || ||||| Sbjct 769234 CCGGGGCACTCGTTGGGGCACATGAGGGTCCAGTCACCGTTCTTCTCGACACGCTTCATG 769293 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 ||||| || |||||||| || || | || || || | | | |||||| ||||| Sbjct 769294 AAGAGGTCGGGAATCCAGAGGGCCAGGAACAGGTCGCGAGCACGGACCTCCTCCTTTCCG 769353 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 ||||| || || |||||| | | | || | ||||| || || | ||| ||| Sbjct 769354 TGGTTCTTGCGGAGGTCAAGGAACTCGAAGACGTCGGCGTGCCAAGGCTCAAGGTAGATG 769413 Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213 | | | || || || ||||| || ||||| || | ||| | || ||||| || || Sbjct 769414 CAGAAAGCACCGGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGTGTTGTTGTAG 769473 Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273 || | | ||| || || || || ||||| | ||| ||||| |||| || ||| ||| Sbjct 769474 ACACGGAGCATGGGGATGATGCCGTTGGAGGTACCGTTGGTACCGGCAATGTAGGAGCCA 769533 Query 72274 CTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 72331 ||||||| || | || |||| |||| || || || ||| | || ||||| | | Sbjct 769534 GTGGCACGGATGCAGTGGGCGTTGA--GACCAATGCCACCGGCCGTCTTGGAGATCATGG 769591 Query 72332 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 72391 | || || | || || ||||| || || || || |||||| |||||| | || | Sbjct 769592 CACAGGTCTTGAGGGTGTCGTAGATACCGTCAATGCTGTCATCCTTCATGTCGACGAGGA 769651 Query 72392 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 72451 | || ||||| ||| | || || || || || | ||| || || ||||| | Sbjct 769652 AGCACGAAGACAGCTGGGCCTGGGGGGTACCAGCGTTGAAGAGGGTGGGCGAGGCGTGGG 769711 Query 72452 TAAACCATTTTTCAGACAGTAGATTGTACGTCTCAAT----AGCT-GATTCTAT-ATCCC 72505 | || || || |||| || |||||||||||||| ||| ||| | | | ||| Sbjct 769712 TGAAGCACTTGCTCGACATGAGGTTGTACGTCTCAATGACACGCTCGATGTTGTCACCCC 769771 Query 72506 ATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGT 72565 | |||| || || || |||||||| | ||| ||||| || | || || |||||| Sbjct 769772 A--GATG----CCGACGGCAACACGCATGATCATGTGCTGGGGACGCTCGACAATCTTGC 769825 Query 72566 TATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 72625 | | || | || |||||| || | ||| || |||||||| || | ||| | Sbjct 769826 CGTCGAGCTTGAGCAGGTAGGAGCGCTCAAGAGTCTTGAAACCAAAGTACTGGTAGTTGA 769885 Query 72626 AGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTT 72665 |||| || ||||| | ||| |||| | ||| | ||||| Sbjct 769886 AGTCACGGTCGTAGACAATGGCCGAGTCGAGCTCGTCCTT 769925 Score = 91.5 bits (100), Expect = 2e-13 Identities = 132/184 (72%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 70791 CTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCC 70850 || ||||| || ||||| ||||| | || ||||| | || || || ||||||||||| Sbjct 768042 CTGGTCCACGGTGAACTGGATGGGCGCGGCGGCGGCGGTGGTGCGCAGGTAGTACATGCC 768101 Query 70851 TGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTA-GTTTGGAATAGCTAG 70909 || || ||||| || |||| ||| ||| ||||| ||||| | || |||| ||| Sbjct 768102 CGTCTTGAGACCCAGCTTCCAGCCGGCAAAGTGCATGCTCGTGATCTTACCCATAG-TAG 768160 Query 70910 GATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 70969 |||| ||||| || || | |||||| || ||||| ||||| || | ||| |||| Sbjct 768161 GATCCTTCATGTGGATGTTGAGCGACTGCGACTGGTCGATAAAGGCACCGCGGTCGGCAG 768220 Query 70970 CCAT 70973 |||| Sbjct 768221 CCAT 768224 >seq1461 Length=46181 Score = 105 bits (116), Expect = 9e-18 Identities = 173/249 (69%), Gaps = 3/249 (1%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| ||| ||| |||||||| || | || | |||||||| || || || Sbjct 33241 CAGGCGAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTCAGA 33182 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 |||||||| || |||||||| || ||||| || || || ||||| | ||| |||||| Sbjct 33181 CCGGGCATCAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCTCCGCTGAAGAAG 33122 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACTGTCATGT 42241 || || || || || |||||||||| || | || || | || | |||| || Sbjct 33121 ATACCCTCGACGGCGGCAAAGGCAACCAGACGCTGGGCAAAGGTGGAGTCCTTGTCCTGG 33062 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 |||||| | ||||| ||||||||||| | || || || || || ||||| || Sbjct 33061 ATCCACCTGATGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGGTCTCAATGGCGTTG 33002 Query 42302 AAGAGATAG 42310 ||||| ||| Sbjct 33001 AAGAGGTAG 32993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671123939972440