Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geosmithia_20flava_20[genbank_20GCA_5F900188565.1_202017-06-24] 1,819 sequences; 29,823,260 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1768 140 2e-28 seq1602 140 2e-28 seq24 104 2e-17 seq1774 102 5e-17 >seq1768 Length=466547 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 465730 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 465789 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 465790 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 465824 >seq1602 Length=10865 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 2166 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 2225 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 2226 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2260 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 10048 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 10107 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 10108 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 10142 >seq24 Length=834752 Score = 104 bits (114), Expect = 2e-17 Identities = 201/295 (68%), Gaps = 4/295 (1%) Strand=Plus/Plus Query 6195 GACGCGTTCTACCGCTACAAAATGCCGCGCATCTGC--GCCAAGGTCGAGGGTAAGGGAA 6252 ||||| |||||||||||||| ||| | || ||||| ||||| | || || ||||| | Sbjct 208931 GACGCCTTCTACCGCTACAAGATG--GAGCGTCTGCAGACCAAGATTGAAGGCAAGGGTA 208988 Query 6253 ACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTG 6312 ||||||| || || || | |||||| |||| ||||| || | || | || || | Sbjct 208989 ACGGTATCAAGACGGTTGTCGTCAACCTGCCGAGCGTCGCCCAGTCCCTGGCCCGTCCCG 209048 Query 6313 CCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACA 6372 || || | || || || || | ||| || || || ||||| | | || | || Sbjct 209049 GTGCCCACGTCATCAAGTACTTTGGCTTCGAGCTGGGTGCCCAGACCAACATCGACCCCA 209108 Query 6373 AAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTG 6432 | | || |||| ||| | ||||| | || |||| |||||||| ||||||| || | Sbjct 209109 AGGATGATCGCTGGATCATCAACGGCGCCCACGACTCGGCCAAGCTCCAGGACTACCTCG 209168 Query 6433 ACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 | ||||| || || |||||| || || | | ||| | ||||| ||||| || Sbjct 209169 ATGGCTTCATCAACAGGTTTGTTCTCTGCAAGAAGTGCAAGAACCCCGAGACGGA 209223 >seq1774 Length=381457 Score = 102 bits (112), Expect = 5e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||| ||||||||||||||||| || || ||||| ||||||| || |||| || Sbjct 142551 ACCAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCGTCCTCG 142492 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | || || || ||||| || || || || || || | |||| ||| || |||||| | Sbjct 142491 AGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGA 142432 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || ||| || || | | ||| || | | ||| || || | ||||| || || Sbjct 142431 ATCTTCGACTTGACGTTGTCAATAGTGTCGCTAGATTCCACCTCGAGAGTAATCGTCTTT 142372 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||| ||| || ||||| |||||||| Sbjct 142371 CCCGTCAGGGTCTTGACGAAAATCTGCAT 142343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334939774534589