Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geosmithia_20flava_20[genbank_20GCA_5F900188565.1_202017-06-24] 1,819 sequences; 29,823,260 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq805 145 2e-29 seq1461 131 5e-25 seq41 107 6e-18 seq1715 84.2 6e-11 >seq805 Length=824856 Score = 145 bits (160), Expect = 2e-29 Identities = 182/247 (74%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 302571 GTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGC 302630 |||||||| | ||||| | ||||||||| || |||||||| | || || ||||| Sbjct 781364 GTCTTCCAGAGCCTTGACCAGACGACGCTGGATGTAACCAGTCTCGGCAGTCTTGACAGC 781423 Query 302631 TGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-A 302689 || ||||| ||||| |||||||| |||| || |||||||| | || || ||| | Sbjct 781424 CGTGTCAATCAGACCTTCACGACCAGCCATGGCGTGGAAGAAGAATTCGGTGGG-CGTCA 781482 Query 302690 GCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGG 302749 | || | | | ||| |||| ||||| ||||||| ||||||||| | ||| ||||| Sbjct 781483 GACCACGCAGGTAAGAGTTCTCGACGAAGCCACGCGACTCGGGCGAGTAATCGTCCTTGG 781542 Query 302750 TAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCT 302809 | ||||| |||||||| | || || ||||| | |||||||||||||| || || ||| Sbjct 781543 TGAAGTGAGGCAGGGTGCGGTACTTGAAGCCGAAGGGGATACGCTTTCCCTCCACCATCT 781602 Query 302810 GCTGTCC 302816 |||| || Sbjct 781603 GCTGGCC 781609 >seq1461 Length=46181 Score = 131 bits (144), Expect = 5e-25 Identities = 245/355 (69%), Gaps = 4/355 (1%) Strand=Plus/Plus Query 133305 CCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACAT 133364 |||| || || ||| || || | ||||| |||||| || ||||| || || | Sbjct 32887 CCGAGGCTCGCTGCTTCTACGGTTTCCAGATCATGATGGAGAACATCCACTCCGAGACCT 32946 Query 133365 ATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACG 133424 | ||| || ||||| || |||||||| || |||| |||| | | || ||||||| Sbjct 32947 ACTCTCTGCTCATTGACACCTACATCAAGGAGACCGCCCAGCGCGCCTACCTCTTCAACG 33006 Query 133425 CCATTAGCGAATTTCCT-TGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAG 133483 ||||| | || ||| || || ||||| | |||||||| || | ||||||||| Sbjct 33007 CCATT-GAGACCATCCCCTGCATCCGCAAGAAGGCCGACTGGGCCATCAGGTGGATCCAG 33065 Query 133484 GACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAttttt 133543 |||||| | | ||||| ||||| ||||| ||||| | || ||||| || || Sbjct 33066 GACAAGGACTCCACCTTTGCCCAGCGTCTGGTTGCCTTTGCCGCCGTCGAGGGTATCTTC 33125 Query 133544 ttCAGTGGTGCGTTCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACT 133602 ||||| || || || ||| || || || ||||| || ||||||||| | | || || || Sbjct 33126 TTCAGCGGAGCCTT-TGCTTCCATCTTCTGGCTCAAGAAGCGTGGTCTGATGCCCGGTCT 33184 Query 133603 GTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 | || || ||||| || || || | ||||||| || |||||||| || ||| Sbjct 33185 GACCTTCTCCAACGAGCTCATCTCGCGTGACGAGGGTCTCCACACCGACTTCGCC 33239 >seq41 Length=172349 Score = 107 bits (118), Expect = 6e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || |||||||| | || || || || ||| | || || || | ||| | || || Sbjct 112398 ATGAGACCACAGACCTCGCAGACGTGAACTCTGAAGGCGTCGGAGACTTCAAAGAGACGC 112339 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 ||||| |||| | |||||||| | ||||||||||||||| |||||||| |||||| Sbjct 112338 TCCTTGAGGAAGGCGGCAGCACCGTGGGCAATCATACAATCACGTTCCATTTCTCCGAAA 112279 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGT 251570 ||||||||||| || || || | ||||||| ||||||| || || Sbjct 112278 CGAAGACCACCGTCTCGGGCACGACCCTCGACAGGCTGTCGTGT 112235 >seq1715 Length=270369 Score = 84.2 bits (92), Expect = 6e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 354015 GGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAAC 354074 ||| ||| |||| || ||||||||||| ||||| |||||||| ||||| |||| || | Sbjct 126320 GGCCAGACCACCCAGAGAGTCACGGTCCAGGAAGTTAGTAGGCTCGTCCAGGACCAGCAG 126379 Query 354075 GTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134 || || | ||||||| || | || | || ||||| ||||||||||| || || || Sbjct 126380 ATGGGGGTTGTTCCACATGGCACCGGCGATGACAACCTTGACCTTCTGTCCACCGGACAG 126439 Query 354135 TGCGTGAATCT 354145 | | ||||| Sbjct 126440 CGAGCCAATCT 126450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471783297911003