Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geosmithia_20flava_20[genbank_20GCA_5F900188565.1_202017-06-24] 1,819 sequences; 29,823,260 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1774 122 3e-22 seq1 109 2e-18 seq805 102 2e-16 seq1475 96.9 1e-14 >seq1774 Length=381457 Score = 122 bits (134), Expect = 3e-22 Identities = 168/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||||| || ||||| | | || || || |||||||| ||| || || || || | Sbjct 142577 TTTACTGGCCGCCACGGAGACGGAGGACCAGGTGAAGAGTGCTCTCCTTCTGGATGTTGT 142518 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | ||||| | || || || || || || || || ||||||||||| ||||| ||||| | Sbjct 142517 AGTCAGACAGGGTGCGACCGTCCTCGAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGT 142458 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 ||||||| || || || || |||||||| || | || || || ||||| | || | Sbjct 142457 CAGGAGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATAGTGTCGCTAG 142398 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || || |||| |||||||| || || || || || ||||||||||| Sbjct 142397 ATTCCACCTCGAGAGTAATCGTCTTTCCCGTCAGGGTCTTGACGAAAATCTGCAT 142343 Score = 120 bits (132), Expect = 9e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || || || ||||| || || || || || || Sbjct 142117 CATACCACCACGGAGGCGGAGGACGAGGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTC 142058 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| ||||| || || |||||||| || || || ||||| || || Sbjct 142057 GGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAAATCAGGCGCTGCTGGTCCGG 141998 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || ||||| || || | || || || || || | || || | || Sbjct 141997 GGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGACGACTC 141938 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || || | ||||| ||||| || || || ||||| |||||||| Sbjct 141937 AACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 141887 Score = 107 bits (118), Expect = 6e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| || || || || ||| || || || || || || Sbjct 141889 CATACCACCACGGAGGCGAAGAACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTC 141830 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || || ||||||||||| ||||| ||||| ||||| Sbjct 141829 GGAGAGAGTACGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCAGG 141770 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || ||||| || || | || ||||| || || | || || | || Sbjct 141769 AGGAATGCCCTCCTTGTCCTGGATCTTCGACTTCACATTGTCGATGGTGTCGGAGGACTC 141710 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713 ||| || || || | ||||| ||||| Sbjct 141709 AACCTCGAGGGTGATGGTCTTGCCGGT 141683 >seq1 Length=302712 Score = 109 bits (120), Expect = 2e-18 Identities = 233/348 (67%), Gaps = 0/348 (0%) Strand=Plus/Plus Query 349577 GCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTT 349636 ||||| || || | |||| || || || | || ||| | ||||| || ||||| || Sbjct 22503 GCTGAGGCCTACCTCGGTGGCACCGTCACCAACGCCGTTGTCACTGTCCCCGCCTACTTC 22562 Query 349637 AATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTA 349696 || || |||||||| || || || || || || |||||| || | || || || Sbjct 22563 AACGACTCCCAGCGTCAGGCTACCAAGGACGCCGGTCTCATTGCCGGTCTCAACGTCCTC 22622 Query 349697 AGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGAC 349756 | || || || || ||||| || || || || || || || || || || | || || Sbjct 22623 CGTATCATCAACGAGCCCACCGCCGCTGCCATCGCCTACGGTCTCGACAAGAAGATCGAG 22682 Query 349757 CAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTA 349816 || || | || || || ||| | ||||||||||| || ||||| || || || Sbjct 22683 GGTGAGCGCAACGTCCTGATCTTCGATCTGGGTGGTGGTACCTTCGATGTTTCTCTCCTC 22742 Query 349817 ACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGA 349876 || | || ||||| || || || || || | || |||||||| || || || ||||| Sbjct 22743 ACCATCGAGGAGGGTATCTTCGAGGTCAAGTCTACCGCTGGTGACACTCACCTGGGTGGT 22802 Query 349877 GAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAG 349924 || || || || || ||||| || || || || | |||||| ||| Sbjct 22803 GAGGACTTCGACAACCGTCTTGTCAACCACTTCGTCACAGAATTCAAG 22850 >seq805 Length=824856 Score = 102 bits (112), Expect = 2e-16 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 ||||||||||| | | || || || || || || ||||| || || || || || || Sbjct 371903 ATACCACCACGGAGGCGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCG 371844 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 || | || || || || ||||| || ||||| |||||||| ||||| ||||| || || Sbjct 371843 GACAGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGG 371784 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687 || || || || || ||||| || || | || ||||| ||||| | || || | || Sbjct 371783 GGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATGGTGTCCGAGGACTCG 371724 Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAA 140728 || || || || | ||||| || || || || || || || Sbjct 371723 ACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 371683 Score = 89.7 bits (98), Expect = 2e-12 Identities = 100/133 (75%), Gaps = 3/133 (2%) Strand=Plus/Plus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || ||||||||| | || || ||| || || | |||||||| || ||||| || || Sbjct 780603 CGAGGCACACCAAGAGTGACGTTC---TTGGACGACACACCAGCGAAATGGAAGGTGTTG 780659 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | ||||| | ||||| || || |||||||| || | ||||||||||||||| Sbjct 780660 AGCGTCATCTGAGTGGCAGGCTCTCCGATAGACTGCGCCGCGAGAACGCCAACCATTTCA 780719 Query 377578 CCAGGATTGACAA 377590 ||||| |||||| Sbjct 780720 CCAGGGCTGACAA 780732 >seq1475 Length=277423 Score = 96.9 bits (106), Expect = 1e-14 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || || || ||||| ||||| || || || || || || Sbjct 220655 ACCACCACGGAGGCGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCT 220596 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || ||||| ||||| || || ||||||||||| || || ||||| || || || Sbjct 220595 CAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGG 220536 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || || || || ||||| || || | || || || || || | || || | || || Sbjct 220535 GATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 220476 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | ||||| || || || || || || || |||||||| Sbjct 220475 CTCGAGGGTGATAGTCTTCCCCGTAAGGGTCTTGACGAAGATCTGCAT 220428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515219085575657