Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geosmithia_20flava_20[genbank_20GCA_5F900188565.1_202017-06-24] 1,819 sequences; 29,823,260 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1199 111 1e-19 >seq1199 Length=300581 Score = 111 bits (122), Expect = 1e-19 Identities = 213/306 (70%), Gaps = 10/306 (3%) Strand=Plus/Plus Query 6724 CGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTT 6783 || ||||||||| ||| | ||||||| || ||||| |||||| || || | Sbjct 272517 CGAGACGTAGAACTGGGCAAACATGTGGCAGGGCGGGAGGGCCATCTTCTTGATGTCGCT 272576 Query 6784 CGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGAT 6843 |||||||| || |||| | ||| | || ||| ||| | ||| | ||| ||| Sbjct 272577 GGGGTTCCAGGCCGACATGATGATGCGTCGGTCGAAGGGGGTATTCTTGAGCTTGTGGAT 272636 Query 6844 CACGTACTGC-AGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGA--TA 6900 ||| | | || |||||||| | ||||| ||| ||||| | | || | | || || Sbjct 272637 CACCT-CGGCGAGCTGGTCGACGCCCTGGCCCTGGTAGTCGG-TGCGGGCGTC-GACGTA 272693 Query 6901 CTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCG 6960 ||| || || ||||| | ||||||||| |||||||| ||||||| ||||||| |||| || Sbjct 272694 CTCGGCGCCGAAGTGGCGCCACTGGAAGCCGTAGACGGGGCCCAGGTCGCCCACCTCGCG 272753 Query 6961 AGATGGGAACCCCCG--CTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 || ||| ||| |||||| || || || || || |||| ||||||||||||| Sbjct 272754 G--TGCGAAAGGCCGACCTTGTCGAGGAACTCGCGCGAGCCGTTCCCGTCCCAGATCTTG 272811 Query 7019 Accccc 7024 || ||| Sbjct 272812 ACGCCC 272817 Score = 111 bits (122), Expect = 1e-19 Identities = 213/306 (70%), Gaps = 10/306 (3%) Strand=Plus/Minus Query 34321 GGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAG--CGGGGGTTC 34378 ||| || ||||||||||||| |||| || || || || || |||||| ||| ||| Sbjct 272817 GGGCGTCAAGATCTGGGACGGGAACGGCTCGCGCGAGTTCCTCGACAAGGTCGGCCTTTC 272758 Query 34379 CCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGG 34438 || || |||| ||||||| ||||||| |||||||| ||||||||| | ||||| || Sbjct 272757 GCA--CCGCGAGGTGGGCGACCTGGGCCCCGTCTACGGCTTCCAGTGGCGCCACTTCGGC 272700 Query 34439 GCGGAGTA--TCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAG 34495 || ||||| || | | || | | ||||| ||| ||||| | |||||||| || | Sbjct 272699 GCCGAGTACGTC-GACGCCCGCA-CCGACTACCAGGGCCAGGGCGTCGACCAGCTCGCCG 272642 Query 34496 TACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGG 34555 | |||||| ||| | ||| | ||| ||| || | ||| | |||| || ||| Sbjct 272641 -AGGTGATCCACAAGCTCAAGAATACCCCCTTCGACCGACGCATCATCATGTCGGCCTGG 272583 Query 34556 AACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTAC 34615 ||||| | || || |||||| ||||| || ||||||| | ||| |||||| Sbjct 272582 AACCCCAGCGACATCAAGAAGATGGCCCTCCCGCCCTGCCACATGTTTGCCCAGTTCTAC 272523 Query 34616 GTCGCG 34621 ||| || Sbjct 272522 GTCTCG 272517 Score = 105 bits (116), Expect = 6e-18 Identities = 130/174 (75%), Gaps = 4/174 (2%) Strand=Plus/Plus Query 6537 TCCGGAGCCGCTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCT 6596 ||| ||||| |||| ||||| ||||| | |||||||| |||| |||| ||| Sbjct 272275 TCCAGAGCC--TCGACGTGGTCAAGGTAAACGTGCGCATCACCCATGACATGCGTCAGGC 272332 Query 6597 CCCCAGGAACCAACCC-CACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCA 6655 |||| || |||| | ||| ||||| || ||||||| ||||||||||||||| ||||| Sbjct 272333 CCCCCGGCACCAGGTCGCAC-ACATGGGCAATCATGTGCGTGAGCAGAGCGTAGCTAGCG 272391 Query 6656 ATGTTGAACGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAG 6709 || ||||| ||||| || || ||||| || | ||| | || || ||||| ||| Sbjct 272392 ATATTGAAGGGCACTCCCAAGCCCATATCGCACGACCTCTGGTACAGCTGACAG 272445 Score = 105 bits (116), Expect = 6e-18 Identities = 130/174 (75%), Gaps = 4/174 (2%) Strand=Plus/Minus Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 ||| ||||| || || | ||| | || ||||| || || ||||| ||||| || ||||| Sbjct 272445 CTGTCAGCTGTACCAGAGGTCGTGCGATATGGGCTTGGGAGTGCCCTTCAATATCGCTAG 272386 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTG-GGGTTGGTTCCTGGGGAGCTGG 34754 ||||||||||||||| ||||||| || ||||| ||| | |||| || |||| ||| Sbjct 272385 CTACGCTCTGCTCACGCACATGATTGCCCATGT-GTGCGACCTGGTGCCGGGGGGCCTGA 272327 Query 34755 TGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGA 34808 |||| |||| |||||||| | ||||| ||||| |||| ||||| ||| Sbjct 272326 CGCATGTCATGGGTGATGCGCACGTTTACCTTGACCACGTCGA--GGCTCTGGA 272275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448252207633680