Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geosmithia_20flava_20[genbank_20GCA_5F900188565.1_202017-06-24] 1,819 sequences; 29,823,260 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1475 145 2e-29 seq1774 127 5e-24 seq805 127 5e-24 seq476 109 1e-18 >seq1475 Length=277423 Score = 145 bits (160), Expect = 2e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| |||||||||||||| || || |||| ||||| ||| || ||| | ||||| Sbjct 220639 AGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCC 220580 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| || || || ||||| || || ||||| |||||||| Sbjct 220579 TCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCC 220520 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| || | ||||| || | ||||| ||| Sbjct 220519 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTC 220460 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || ||||| | || || | ||| | ||||| || Sbjct 220459 TTCCCCGTAAGGGTCTTGACGAAGATCTGCATCTT 220425 >seq1774 Length=381457 Score = 127 bits (140), Expect = 5e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || |||||||| ||| || || |||| ||||| |||| | ||| | || || Sbjct 141870 AGAACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCC 141811 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| || || || ||||| || ||||| || |||||||| Sbjct 141810 TCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 141751 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| ||||||||||| |||| || || || | ||||| ||| Sbjct 141750 TGGATCTTCGACTTCACATTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTGATGGTC 141691 Query 225682 TTGCCCGT 225689 ||||| || Sbjct 141690 TTGCCGGT 141683 Score = 123 bits (136), Expect = 6e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| |||||||| || || || || |||| ||||| |||| | ||| | ||||| Sbjct 142098 AGGACGAGGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCC 142039 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| || || || || || ||||| || ||||| || |||||||| Sbjct 142038 TCAAGCTGCTTGCCAGCAAAAATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 141979 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| || | || || || | ||||| ||| Sbjct 141978 TGGATCTTGGACTTGACGTTGTCGATGGTGTCCGACGACTCAACCTCCAGGGTGATGGTC 141919 Query 225682 TTGCCCGT 225689 ||||| || Sbjct 141918 TTGCCGGT 141911 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||||||||| || || || || || || | ||||| || | || || | ||||| Sbjct 142326 AGGACAAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCAGACAGCGTGCGGCCATCC 142267 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||| || ||||| || |||||||| Sbjct 142266 TCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 142207 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || || || || || || | || || || | |||||| ||| Sbjct 142206 TGGATCTTGGACTTGACGTTGTCAATAGTATCCGACGACTCGACCTCGAGCGTGATGGTC 142147 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || || | ||| | ||||| Sbjct 142146 TTGCCGGTCAACGTCTTGACGAAGATCTGCAT 142115 >seq805 Length=824856 Score = 127 bits (140), Expect = 5e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || ||||| || || |||| ||||| |||| || || | || || Sbjct 371885 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCC 371826 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || || || ||||| || || || || |||||||| Sbjct 371825 TCAAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 371766 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| || |||||||| |||| || || || | ||||| ||| Sbjct 371765 TGGATCTTGGACTTGACATTGTCAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTC 371706 Query 225682 TTGCCCGTCAAAGTTTTTATGAA 225704 |||||||||| || || | ||| Sbjct 371705 TTGCCCGTCAGGGTCTTCACGAA 371683 >seq476 Length=19763 Score = 109 bits (120), Expect = 1e-18 Identities = 192/279 (69%), Gaps = 3/279 (1%) Strand=Plus/Minus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATT 7500 || |||||||||||||||| ||||||||| | ||||||| ||| ||| || | Sbjct 18064 ACATTATATTTAATATTTGCCTTATTTTCTGGTTTATTAGGTACAGCATTCTCTGTGTTA 18005 Query 7501 ATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTAC 7560 ||||| | |||||| || |||||| |||| || | | ||| | ||| | | | Sbjct 18004 ATAAGAATGGAATTAAGTGGACCGGGTGTTCAA---TTTATTTCTAACAATCAATTATTC 17948 Query 7561 AACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATG 7620 || ||| | || || || || | | ||||||||||| | |||||||| | | | Sbjct 17947 AATAGTATAGTAACAGCACACGCTATATTAATGATTTTCTTCATGGTTATGCCTGCTTTA 17888 Query 7621 ATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTT 7680 || || ||||| || || | || | ||||||||| | || | || |||||||| || Sbjct 17887 ATTGGAGGTTTTGGTAACTTCTTAATGCCTTTAATGGTAGGAGGACCCGATATGGCATTC 17828 Query 7681 CCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719 || || | || || || ||||| |||||| |||| ||| Sbjct 17827 CCTAGATTAAATAACATTAGTTTCTGATTATTACCACCT 17789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192503406942386