Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gliomastix_20tumulicola_20[genbank_20GCA_5F001599755.1_202016-03-01] 72 sequences; 42,385,401 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq2 141 2e-28 seq1 87.8 4e-12 >seq2 Length=5694997 Score = 141 bits (156), Expect = 2e-28 Identities = 273/400 (68%), Gaps = 26/400 (7%) Strand=Plus/Minus Query 254011 TGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAA 254070 |||||||| |||||||||| || ||||| ||||| || |||||||||||||| ||| | Sbjct 3586094 TGCTTTTCTACGGTCCTCCGGGGACAGGAAAGACATCGACCATCCTGGCGCTCGCC---A 3586038 Query 254071 CCCTGTTGGGCGAGG-GGAACATGAGAGAG---CGCGTGCTCGAGCTGAACGCTTCTGAC 254126 | |||| || ||||| ||| || || || |||||||||||||| || ||| Sbjct 3586037 AGCAGTTGTACGGTCCGGAAC-TGATCAAGTCACGAGTCCTCGAGCTGAACGCCTCCGAC 3585979 Query 254127 GAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGATGT------CG 254180 || || || | | ||||||| ||||| | |||| ||| || ||| || Sbjct 3585978 GAGCGTGGCATCTCCATCGTCCGAGACAAAGTGAAGAACTTCGCCCGCATGCAACTGACG 3585919 Query 254181 ATTTCGTCGT--TCC----------AACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTG 254228 | || | ||| || | ||| |||||||||||| || | ||||| Sbjct 3585918 AACCCGACCGCATCCTATAAGCAGAAATTCCCCTGCCCGCCTTTCAAGATCATCATCCTC 3585859 Query 254229 GACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACG 254288 |||||||| ||| ||||||| ||||| ||| ||| || || ||||| |||||||| Sbjct 3585858 GACGAGGCCGACTCCATGACCCAAGACGCCCAGAGCGCGCTGCGACGAACCATGGAGACC 3585799 Query 254289 CACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCATCGCCCCG 254348 || | | || ||||| |||||| | |||||||||||| | ||||||| || Sbjct 3585798 TACAGCAAGATCACACGTTTCTGCCTGATCTGCAACTACGTGACTCGCATCATCGATCCC 3585739 Query 254349 CTGGCTTCTCGGTGCGCCAAGTTTCGATTCAGCACCCTCG 254388 ||||| ||| ||| |||||| || |||| | ||||| Sbjct 3585738 CTGGCAAGTCGATGCAGCAAGTTCCGCTTCAAGAGCCTCG 3585699 Score = 105 bits (116), Expect = 1e-17 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 254017 TCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAACCCTGT 254076 || |||| || ||||| || ||||||||||| || ||||||||||| ||||| | | | Sbjct 1924393 TCTACGGCCCCCCCGGGACGGGCAAGACGTCCACGATCCTGGCGCTCGCCCGCCGCATCT 1924334 Query 254077 TGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAACGCGGGT 254136 |||| ||||||| | || || || ||||| ||||| || ||||| ||||| Sbjct 1924333 ACGGCGTCTCGAACATGCGGCAGATGGTCCTGGAGCTCAACGCCTCCGACGACCGCGGCA 1924274 Query 254137 TGGACGTCGTCCGCGACAAGATCAAGACTTT 254167 | |||||||||||||| |||||||||| || Sbjct 1924273 TCGACGTCGTCCGCGAGCAGATCAAGACGTT 1924243 >seq1 Length=7437554 Score = 87.8 bits (96), Expect = 4e-12 Identities = 220/332 (66%), Gaps = 18/332 (5%) Strand=Plus/Minus Query 254037 GGCAAGACGTCAACCATCCTGGCGCTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGA 254096 ||||||||| | | | | ||| ||||| || || ||||||| | ||| | Sbjct 5309450 GGCAAGACGACGAGCGTGCTGTGCCTGGCGCGGCAGATGCTGGGCGACTCGTACAAG--- 5309394 Query 254097 GAGCGCGTGCTCGAGCTGAACGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAG 254156 ||| |||||| ||||| ||||| ||||| ||||| | |||||||| || || Sbjct 5309393 GAGGCCGTGCTGGAGCTCAACGCCAGCGACGAGCGCGGCATCGACGTCGTGCGGAACCGC 5309334 Query 254157 ATCAAGACTTTCTCCAAGATGTCGATTTCGTCGTTCCAACCCGGCTGTCCGCCTTTCAAG 254216 |||||| ||| | ||| | | | || | |||| | | | || |||| Sbjct 5309333 ATCAAGGGCTTCGCGCAGAAGAAGGTCACGCTG------CCCGCCGGGCGGCA---CAAG 5309283 Query 254217 CTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGA 254276 ||||| ||||||||||||||||||| ||||||| | | ||||||| || || || || Sbjct 5309282 CTCGTCATCCTGGACGAGGCGGACAGCATGACGTCGGGCGCGCAGCAGGCGCTGCGGCGG 5309223 Query 254277 ACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTC---G 254333 |||||||||| |||| |||||| ||| | | ||||||| | ||| Sbjct 5309222 ACGATGGAGATCTACTCGAACACGACGCGGTTTGCGTTCGCGTGCAACCA---GTCCAAC 5309166 Query 254334 AAGATCATCGCCCCGCTGGCTTCTCGGTGCGC 254365 |||||||||| |||||| || ||||||| Sbjct 5309165 AAGATCATCGAGCCGCTGCAGTCGAGGTGCGC 5309134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073765409450496