Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gliomastix_20tumulicola_20[genbank_20GCA_5F001599755.1_202016-03-01] 72 sequences; 42,385,401 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq4 122 2e-22 >seq4 Length=5284358 Score = 122 bits (134), Expect = 2e-22 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | ||||| || ||||| || |||||||| || || | ||| || Sbjct 3189393 AAGGACAAGATGGAGGGTAGACTCCTTCTGGATGTTATAGTCGCTGAGGGTGCGACCATC 3189452 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || ||||| || || || | ||| || |||||||| || || || || || Sbjct 3189453 CTCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTC 3189512 Query 104467 CTGAATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 ||||||| ||||| || || || || | || ||||| | || |||||||| || |||| Sbjct 3189513 CTGAATC-TTGCTCTTCACGTTGTCAATCGTGTCGCTCGACTCCACCTCTAGGGTGATAG 3189571 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || || || || || || || |||||||| Sbjct 3189572 TCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 3189605 Score = 111 bits (122), Expect = 4e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || || |||||||| || ||||| || || || | |||||| Sbjct 3189622 AGCACGAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGACCGTCC 3189681 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || |||||||| || || | ||| || || || || || || || || ||| Sbjct 3189682 TCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 3189741 Query 104468 TGAATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||| ||||| || ||||| || | || || | || ||||| || || || || Sbjct 3189742 TGAATC-TTGCTCTTCACATTGTCGATCGTGTCAGATGACTCGACCTCCAGCGTGATCGT 3189800 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||| || || || || || || |||||||| Sbjct 3189801 CTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 3189833 Score = 95.1 bits (104), Expect = 3e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || || || || || |||| ||||| || || || || ||| Sbjct 3189865 GTGGACTCCTTCTGAATGTTGTAATCGGAGAGGGTTCGGCCGTCCTCAAGCTGCTTGCCA 3189924 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| || || || || || || ||||||||||| | || Sbjct 3189925 GCGAAGATCAGGCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGAATCTTCGACTTA 3189984 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | |||||| | || ||||| || || || ||||| || || || || Sbjct 3189985 ACATTGTCGATAGTATCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTC 3190044 Query 104543 TTTAC 104547 || || Sbjct 3190045 TTGAC 3190049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397337834976