Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gliomastix_20tumulicola_20[genbank_20GCA_5F001599755.1_202016-03-01]
72 sequences; 42,385,401 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq4 118 1e-21
seq3 113 5e-20
seq1 89.7 6e-13
>seq4
Length=5284358
Score = 118 bits (130), Expect = 1e-21
Identities = 158/217 (73%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||||| ||| | ||||| || |||||| ||||| ||||| || | || || || |
Sbjct 3189618 ACGCAGCACGAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGACC 3189677
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
||| || |||||||||||||| || ||||| ||||||||||||| || | || ||||||
Sbjct 3189678 GTCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTT 3189737
Query 42113 GTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171
|||| ||| | || | || | | | | |||||| || || || || | |||||
Sbjct 3189738 GTCC-TGAATCTTGCTCTTCACATTGTCGATCGTGTCAGATGACTCGACCTCCAGCGTGA 3189796
Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
| || || ||||| || ||||| || ||||| |||||
Sbjct 3189797 TCGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 3189833
Score = 107 bits (118), Expect = 2e-18
Identities = 141/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || || || || || || || | || || |||||||||||||||||
Sbjct 3189414 CTCCTTCTGGATGTTATAGTCGCTGAGGGTGCGACCATCCTCCAGCTGCTTACCAGCGAA 3189473
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
|| || ||||||||||| | || | | |||||||||| ||| | || | | |||
Sbjct 3189474 GATAAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTCC-TGAATCTTGCTCTTCACGT 3189532
Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195
| | | |||||||||||| ||||| || | ||||| || ||||| || || ||||| |
Sbjct 3189533 TGTCAATCGTGTCGCTCGACTCCACCTCTAGGGTGATAGTCTTGCCGGTCAGGGTCTTGA 3189592
Query 42196 CAAAGATTTGCAT 42208
| ||||| |||||
Sbjct 3189593 CGAAGATCTGCAT 3189605
Score = 100 bits (110), Expect = 3e-16
Identities = 125/169 (74%), Gaps = 2/169 (1%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || |||||||| | ||||| || |||| || |||||||| ||||||||
Sbjct 3190154 CTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAA 3190213
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
||||| ||||||||||||| || | || |||||||||| ||| || |||| |||
Sbjct 3190214 AATGAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGA-CGT 3190272
Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 42184
| | | || || || || || |||| |||||||| ||||| ||
Sbjct 3190273 TGTCGATAGTATCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCAGT 3190321
>seq3
Length=5313354
Score = 113 bits (124), Expect = 5e-20
Identities = 147/201 (73%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 42012 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 42071
||||||||||| || || ||||| || | || || || | || || |||||||| ||
Sbjct 4707947 GTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCG 4708006
Query 42072 GCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 42131
||||| || || ||||||||||||| || | || |||||||||| ||| || |||
Sbjct 4708007 GCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 4708066
Query 42132 AGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 42190
| ||| | | | |||||| || ||||| |||| ||||| || || ||||| || ||
Sbjct 4708067 A-CGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTCCCCGTGAGGGT 4708125
Query 42191 CTTTACAAAGATTTGCATTTT 42211
||| || || || ||||| ||
Sbjct 4708126 CTTGACGAAAATCTGCATCTT 4708146
>seq1
Length=7437554
Score = 89.7 bits (98), Expect = 6e-13
Identities = 132/187 (71%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 42013 TGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAG 42072
|||| |||| || || ||||| |||| || || || | || || |||||||| || |
Sbjct 2326931 TGCTAACCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGG 2326990
Query 42073 CGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGA 42132
|||| || || ||||||||||||| || | || |||||||||| ||| || ||||
Sbjct 2326991 CGAAAATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGA 2327050
Query 42133 GCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192
| | | ||||| || || || || | |||||||| |||||||| || ||||
Sbjct 2327051 CATTGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCT 2327110
Query 42193 TTACAAA 42199
| || ||
Sbjct 2327111 TCACGAA 2327117
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543212311108480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |