Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gliomastix_20tumulicola_20[genbank_20GCA_5F001599755.1_202016-03-01]
72 sequences; 42,385,401 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq3 111 1e-19
seq4 104 2e-17
seq1 100 3e-16
>seq3
Length=5313354
Score = 111 bits (122), Expect = 1e-19
Identities = 142/193 (74%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981
||| || || || ||||| ||| | ||||| ||| || ||||| || || ||| |
Sbjct 4707952 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 4708011
Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTT 127040
||||| |||||||| ||||| || ||||||||||||||| ||| || ||||| |||
Sbjct 4708012 GATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 4708071
Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100
| |||| |||||| | | ||| || |||| ||| | || || || || || || || |
Sbjct 4708072 G-TCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTCCCCGTGAGGGTCTTGA 4708130
Query 127101 CAAAAATCTGCAT 127113
| |||||||||||
Sbjct 4708131 CGAAAATCTGCAT 4708143
>seq4
Length=5284358
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | |||| ||| | ||| | ||| ||||| || ||||| ||||| |||
Sbjct 3189607 CCACCACGCAGACGCAGCACGAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAG 3189666
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| |||||| || || ||||| || ||||| |||| | |||||||| ||||| ||
Sbjct 3189667 AGGGTGCGACCGTCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGCGGG 3189726
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||||||| || || ||| | | |||| ||||| | ||||||
Sbjct 3189727 ATGCCCTCCTTGTCCTGAATCTTGCTCTTCACATTGTCGATCGTGTCAGATGACTCGACC 3189786
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | || | ||| || || || || || || || || ||||||||
Sbjct 3189787 TCCAGCGTGATCGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 3189833
Score = 102 bits (112), Expect = 8e-17
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|||||||| || || || || || |||| | |||||| ||| || ||||| || |||
Sbjct 3189409 GTAGACTCCTTCTGGATGTTATAGTCGCTGAGGGTGCGACCATCCTCCAGCTGCTTACCA 3189468
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| |||| | |||||||| || ||||| || |||||||||||| || || |||
Sbjct 3189469 GCGAAGATAAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGAATCTTGCTCTTC 3189528
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| |||| || | ||||| | ||| || || | ||| | || ||||||||||| ||
Sbjct 3189529 ACGTTG-TCAATCGTGTCGCTCGACTCCACCTCTAGGGTGATAGTCTTGCCGGTCAGGGT 3189587
Query 127096 TTTTACAAAAATCTGCAT 127113
|| || || ||||||||
Sbjct 3189588 CTTGACGAAGATCTGCAT 3189605
Score = 100 bits (110), Expect = 3e-16
Identities = 128/174 (74%), Gaps = 2/174 (1%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||||||| | ||||| || || ||||| || |||
Sbjct 3190149 GTGGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGGCCGTCCTCAAGCTGCTTGCCA 3190208
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| | || | |||||||| |||||||| ||||||||||||||| ||| ||| ||||
Sbjct 3190209 GCGAAAATGAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTTG 3190268
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089
| |||| |||| || |||| |||||| |||| ||| | || ||||| ||
Sbjct 3190269 ACGTTG-TCGATAGTATCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCAGT 3190321
Score = 95.1 bits (104), Expect = 1e-14
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | |||| || | ||| ||||| || ||||| |||||||||
Sbjct 3189835 CCACCACGAAGGCGGAGGACCAGGTGAAGCGTGGACTCCTTCTGAATGTTGTAATCGGAG 3189894
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || || || ||||| || |||||| |||||| ||||||||||| || ||
Sbjct 3189895 AGGGTTCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGATCCGGGGGG 3189954
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||||||| || ||| ||| | | |||| || || | ||||||
Sbjct 3189955 ATGCCCTCCTTGTCCTGAATCTTCGACTTAACATTGTCGATAGTATCGGACGACTCGACC 3190014
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101
|| | ||| | || ||||| ||||| || || ||
Sbjct 3190015 TCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGAC 3190049
>seq1
Length=7437554
Score = 100 bits (110), Expect = 3e-16
Identities = 241/365 (66%), Gaps = 21/365 (6%)
Strand=Plus/Minus
Query 47223 ATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAAC 47282
||||||||||| || || ||||||||| ||||| | ||||| || || |||||| ||
Sbjct 4690792 ATGCCCGGCCTGACCTTCTCCAACGAGCTGATCTCTCGTGACGAGGGTCTTCACACCGAC 4690733
Query 47283 TTTGCCTGTCT-CT--ACTACAACACTA------GAGTCGATCAAAAGTTGGACGTGCCC 47333
|||||||| || || ||| | ||| | | | ||| | ||| || | |
Sbjct 4690732 TTTGCCTGCCTGCTGCACTCCCACATGAAGCACCGCGCCGACAAGAAGGTGATTGAGGAG 4690673
Query 47334 ACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCT 47393
| | ||| |||| || ||| || ||| |||||| | ||||||||
Sbjct 4690672 ATCATCACCGAC------------GCTGTCAGGATCGAGCAGGAGTTCCTTACCGAGGCT 4690625
Query 47394 CTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTC 47453
|| ||| | | | || |||||||| | | |||| ||||||| || || |||
Sbjct 4690624 CTTCCCTGCGCCCTGCTCGGCATGAACGCCAACCTCATGAAGCAGTACATTGAGTTCGTC 4690565
Query 47454 GCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTC 47513
|||||||| || ||||| || | ||||| ||| | || || || |||
Sbjct 4690564 GCCGACCGTCTCCTCGTCGCCCTTGGCAACGAGAAGATCTACAAGTCCTCCAACCCCTTC 4690505
Query 47514 GAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGC 47573
|| || ||| | ||||| || || | |||||||||||||| |||||||||||||||| |
Sbjct 4690504 GACTTCATGGAGAACATCTCCCTGGGTGGCAAGACCAACTTCTTCGAGAAGCGCGTCGCC 4690445
Query 47574 GAATA 47578
|| ||
Sbjct 4690444 GACTA 4690440
Score = 96.9 bits (106), Expect = 3e-15
Identities = 115/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 126950 GTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATG 127009
||||| ||| || ||||| || || ||| | |||| |||||||| ||||| || |||
Sbjct 2326963 GTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCGGGGGGGATG 2327022
Query 127010 CCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCG 127069
|||||||||||| ||| ||| ||||| | |||| |||||||| |||||| ||
Sbjct 2327023 CCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTCCGAGGACTCGACCTCA 2327082
Query 127070 ACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105
| ||| | || ||||| ||||| || || || |||
Sbjct 2327083 AGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAA 2327118
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475500372049280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |