Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gliomastix_20tumulicola_20[genbank_20GCA_5F001599755.1_202016-03-01] 72 sequences; 42,385,401 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq4 105 5e-18 seq3 86.0 5e-12 >seq4 Length=5284358 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||| | ||| ||||| ||| || ||||| ||||| || || || | ||| Sbjct 3189616 AGACGCAGCACGAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGA 3189675 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | ||||||||| ||||| || || ||||| || || | || | ||||||| Sbjct 3189676 CCGTCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCC 3189735 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | | || || | ||| ||||||| ||| Sbjct 3189736 TTGTCCTGAATCTTGCTCTTCACATTGTCGATCGTGTCAGATGACTCGACCTCCAGCGTG 3189795 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || ||||| | || || || || |||||||| Sbjct 3189796 ATCGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 3189833 Score = 104 bits (114), Expect = 2e-17 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| || |||||| ||| || ||||| |||||||| || || |||| |||| || Sbjct 3189853 ACCAGGTGAAGCGTGGACTCCTTCTGAATGTTGTAATCGGAGAGGGTTCGGCCGTCCTCA 3189912 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| || || || ||||| ||||| ||||||| ||| | |||||||||||| | Sbjct 3189913 AGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGA 3189972 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | || || |||| ||| ||||| | || || || || Sbjct 3189973 ATCTTCGACTTAACATTGTCGATAGTATCGGACGACTCGACCTCAAGGGTGATGGTCTTG 3190032 Query 48738 CCCGTCA 48744 ||||||| Sbjct 3190033 CCCGTCA 3190039 >seq3 Length=5313354 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || |||||||| || || || ||||| || || || | || | || || | |||| Sbjct 4707941 TGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGC 4708000 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| || ||||| ||||| || || | ||| | |||||||||||| ||||| Sbjct 4708001 TTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTG 4708060 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || | | | || || | ||||||||| | || || || || ||||| Sbjct 4708061 GACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTCCCCGTG 4708120 Query 48744 AAAGTTTTTACAAAAATCTGCATCGTG 48770 | || || || |||||||||||| || Sbjct 4708121 AGGGTCTTGACGAAAATCTGCATCTTG 4708147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380937265727256