Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gliomastix_20tumulicola_20[genbank_20GCA_5F001599755.1_202016-03-01] 72 sequences; 42,385,401 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1 141 3e-28 seq4 132 1e-25 >seq1 Length=7437554 Score = 141 bits (156), Expect = 3e-28 Identities = 323/481 (67%), Gaps = 4/481 (1%) Strand=Plus/Plus Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678 || || || ||||| || || || |||||||| || || || || || || |||| Sbjct 1690927 ACCGTCCCCGCCTACTTCAACGACTCCCAGCGTCAGGCCACCAAGGACGCCGGTCTCATT 1690986 Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738 || || | || || || | || || || || |||||||| || || || || || || Sbjct 1690987 GCCGGCCTCAACGTCCTCCGTATCATCAACGAGCCCACTGCCGCTGCCATCGCCTACGGT 1691046 Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798 || || || | || ||| || || | || ||||| || | ||||||||||| Sbjct 1691047 CTCGACAAGAAGATTGAGGGCGAGCGTAACGTCCTGATTTTCGACCTCGGTGGTGGTACC 1691106 Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858 || ||||| || || || || |||| ||||| || || || || || | || || ||| Sbjct 1691107 TTCGATGTCTCCCTCCTTACCATTGAGGAGGGTATCTTCGAGGTCAAGTCCACCGCCGGT 1691166 Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAA 349918 || || ||||| ||||| || || || || || || ||||| || || | | || || Sbjct 1691167 GACACTCATCTGGGTGGTGAGGACTTCGACAACCGCCTCGTGTCTCACCTCGCAAATGAG 1691226 Query 349919 TTTAAGCGTCAAG-CTAAAATTGATATTGGAGA-TAATCCTAGAGCAATGCGTCGCCTAA 349976 || || || |||| | || | ||| || || ||| || | || ||||||| || Sbjct 1691227 TTCAAACG-CAAGACCAAGAAGGAT-CTGACGACCAATGCTCGCGCCCTGCGTCGTCTTC 1691284 Query 349977 GAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAA 350036 | ||||| || || ||||| ||||| | | || || || | || ||||| || || | Sbjct 1691285 GCACTGCTTGCGAGCGTGCCAAGCGAACTCTGTCCTCCTCTGCTCAGACCTCGATCGAGA 1691344 Query 350037 TTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAG 350096 |||| ||||| || || | || |||| | ||||| || |||||||| || || | Sbjct 1691345 TTGACTCTCTCTTCGAGGGTATCGACTTCTACACGTCTATCACCCGTGCTCGTTTCGAGG 1691404 Query 350097 A 350097 | Sbjct 1691405 A 1691405 >seq4 Length=5284358 Score = 132 bits (146), Expect = 1e-25 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || ||||| || || ||||| || ||||| || || || Sbjct 3189603 CATACCACCACGCAGACGCAGCACGAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTC 3189662 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || || ||||||||||| ||||| ||||| || || Sbjct 3189663 GGAGAGGGTGCGACCGTCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGG 3189722 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685 || || || || || |||||||| || ||| || ||||| || |||| ||||||| | Sbjct 3189723 CGGGATGCCCTCCTTGTCCTGAATCTT-GCTCTTCACATTGTCGATCGTGTCAGATGACT 3189781 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || || | ||||| || || || || || || || |||||||| Sbjct 3189782 CGACCTCCAGCGTGATCGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 3189833 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || ||||| || ||||| || ||||| || ||||| Sbjct 3189831 CATACCACCACGAAGGCGGAGGACCAGGTGAAGCGTGGACTCCTTCTGAATGTTGTAATC 3189890 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| || || ||||| || || ||||| ||||| || || |||||||| || Sbjct 3189891 GGAGAGGGTTCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGATCCGG 3189950 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || |||||||| || | || ||||| || || | ||| || | || Sbjct 3189951 GGGGATGCCCTCCTTGTCCTGAATCTTCGACTTAACATTGTCGATAGTATCGGACGACTC 3190010 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || ||||| || | ||||| || || || || || || Sbjct 3190011 GACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGAC 3190049 Score = 122 bits (134), Expect = 3e-22 Identities = 170/236 (72%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||||| || ||||| | | || |||||||| || |||||||| || || || |||| Sbjct 3189371 TTTACTGGCCGCCACGAAGACGAAGGACAAGATGGAGGGTAGACTCCTTCTGGATGTTAT 3189430 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | || || ||||| || || || || ||||| ||||| ||||| ||||| | Sbjct 3189431 AGTCGCTGAGGGTGCGACCATCCTCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGT 3189490 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681 |||||||||| || || || |||||||| || ||| || || || ||||||| || Sbjct 3189491 CAGGAGGAATACCCTCCTTGTCCTGAATCTT-GCTCTTCACGTTGTCAATCGTGTCGCTC 3189549 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || || || | ||||| ||||| || || || || || |||||||| Sbjct 3189550 GACTCCACCTCTAGGGTGATAGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 3189605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515253002177816