Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gliomastix_20tumulicola_20[genbank_20GCA_5F001599755.1_202016-03-01] 72 sequences; 42,385,401 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq3 154 4e-32 seq4 140 8e-28 seq1 131 4e-25 >seq3 Length=5313354 Score = 154 bits (170), Expect = 4e-32 Identities = 147/188 (78%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || || ||||||||||||||||| || ||| Sbjct 4708140 CAGATTTTCGTCAAGACCCTCACGGGGAAGACTATCACCCTCGAGGTGGAGTCTTCCGAC 4708081 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 4708080 ACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAG 4708021 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| ||||| | || || |||| || ||| || Sbjct 4708020 CGCCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATC 4707961 Query 178104 CAAAAAGA 178111 || || || Sbjct 4707960 CAGAAGGA 4707953 >seq4 Length=5284358 Score = 140 bits (154), Expect = 8e-28 Identities = 143/187 (76%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || |||||||||||||| || ||| || || ||||| |||||||| Sbjct 3190323 TCACTGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGATACTATCGACAACGTCAAGT 3190264 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||| |||||||| || || |||||||| |||||||| || || || ||||| || | Sbjct 3190263 CGAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGCCTCATTTTCGCTGGCA 3190204 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | ||||| || || || | |||||| ||||||| ||| |||| || || || || || | Sbjct 3190203 AGCAGCTTGAGGACGGCCGCACTCTTTCCGATTACAACATCCAGAAGGAGTCCACCCTCC 3190144 Query 178123 ATCTTGT 178129 | ||||| Sbjct 3190143 ACCTTGT 3190137 Score = 134 bits (148), Expect = 3e-26 Identities = 156/209 (75%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || || ||||| || || || || || || || |||||||| |||||||| ||| Sbjct 3189602 CAGATCTTCGTCAAGACCCTGACCGGCAAGACTATCACCCTAGAGGTGGAGTCGAGC--- 3189546 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||| || || ||||| || |||||||||||||| || || || ||||| |||||| Sbjct 3189545 GACACGATTGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCTCCTGACCAG 3189486 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || ||||||||||| || || ||||| || ||||| | || || ||| |||||| Sbjct 3189485 CAGCGTCTTATCTTCGCTGGTAAGCAGCTGGAGGATGGTCGCACCCTCAGCGACTATAAC 3189426 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || |||||||| Sbjct 3189425 ATCCAGAAGGAGTCTACCCTCCATCTTGT 3189397 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || |||||||| || ||||| || || ||| Sbjct 3189830 CAGATCTTCGTCAAGACCCTCACGGGTAAGACGATCACGCTGGAGGTCGAGTCATCTGAC 3189771 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || |||||||||||||| || || ||||| || |||||||| Sbjct 3189770 ACGATCGACAATGTGAAGAGCAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAGCAG 3189711 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || |||||||| || || | || || |||| || ||| | Sbjct 3189710 CGTCTCATCTTTGCTGGTAAGCAGCTCGAGGACGGTCGCACCCTCTCCGACTACAACATT 3189651 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || |||||||| || Sbjct 3189650 CAGAAGGAGTCGACGCTGCATCTCGT 3189625 Score = 111 bits (122), Expect = 4e-19 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || || || || || || || |||||||| ||||| || || || || |||| Sbjct 3190051 TCGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCGTCCGATACTATCG 3189992 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | || || || |||||||||||||| || || ||||| ||||| ||||| || || | Sbjct 3189991 ACAATGTTAAGTCGAAGATTCAGGACAAGGAGGGCATCCCCCCGGATCAGCAGCGCCTGA 3189932 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 ||||||| || || ||||| || || || | || || ||||||| ||| | || || | Sbjct 3189931 TCTTCGCTGGCAAGCAGCTTGAGGACGGCCGAACCCTCTCCGATTACAACATTCAGAAGG 3189872 Query 178111 AATCAACACTGCATCTTGT 178129 | || || || || || || Sbjct 3189871 AGTCCACGCTTCACCTGGT 3189853 >seq1 Length=7437554 Score = 131 bits (144), Expect = 4e-25 Identities = 137/180 (76%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 ||||||||| || || || || || || |||||||| ||||| || ||| |||||||| Sbjct 2327118 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCAT 2327059 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 ||| || ||||| ||||| |||||||| || || ||||| || |||||||| || || Sbjct 2327058 CGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCT 2326999 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 || |||||||| || |||||||| ||||| | || || | || || ||| |||| || Sbjct 2326998 GATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCTGACTACAACATCCAGAA 2326939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730089557968