Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glonium_20stellatum_20[genbank_20GCA_5F001692915.1_202016-07-26] 2,730 sequences; 40,521,621 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1467 118 2e-21 seq1023 102 2e-16 >seq1467 Length=78481 Score = 118 bits (130), Expect = 2e-21 Identities = 418/645 (65%), Gaps = 20/645 (3%) Strand=Plus/Minus Query 222031 GACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTG 222090 ||| | || |||||| || || || ||||||| || | ||||| |||| || || Sbjct 49434 GACTCGCTTCATGAAAAGATCTGGAATCCACAAGGCGTAGAAGAGGTCTCGGGCACGAAC 49375 Query 222091 CTCCTCCACGCCGTTGTTTTTCCTCAGATCCA-AAAACTCAAAAATGTCAGCGTGCCACG 222149 ||||||| ||||| || || | ||||| | |||||| || | ||||||||||| | Sbjct 49374 CTCCTCCTTGCCGTGATTCTTTCGGAGATCAAGAAAACTGAAGACA-TCAGCGTGCCATG 49316 Query 222150 GCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCT 222209 |||| || |||| ||| | || ||||| ||||| || |||||||| | || ||| Sbjct 49315 GCTCGAGGTAGATGGCAAAGGCACCGGGCCGCTTATTCCCACCCTGGT-CAACATAGCGA 49257 Query 222210 CCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCC 222268 ||| | |||| ||| || | | |||| || ||||| ||| |||||| || || Sbjct 49256 GCAGTGTTGTTGTAGACTCGTAACATTGGTATTAGGCCGTTCGATGTACCGTTCGTTCCA 49197 Query 222269 TTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGAC----ATGCCGATACCACCGGC 222324 ||| || | ||| || | | | || ||| | || ||||| || || Sbjct 49196 CCAATATATGAACCAGTAGCACGAATG----CGGTGGACGTTTAGACCAATACCGCCAGC 49141 Query 222325 GTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTC 222384 | ||| ||||||||||| || | || || ||||| ||||| || || ||| || Sbjct 49140 GGTTTTGGAGATCATGGCACACGTTTTCAGTGTGTCATAAATGCCTTCGATGCTGTCTTC 49081 Query 222385 CTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACAG 222444 ||| | || | || || || || |||||||| | || | | ||| || || || Sbjct 49080 CTTCATGTCAATGAGGAAGCATGAGGACATCTGTGCAGAGGGCGTGCCGGCATTGAATAG 49021 Query 222445 CGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTACGACTCT 222504 ||||| || || |||||||| | ||||| |||||||||||||| || | Sbjct 49020 TGTGGGCGAAGCATGAGTAAAGTATTTGTTGGACATATAATCGTACGTCTCTAGTGCTTT 48961 Query 222505 GGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGGGCCTCTC 222564 | || | || || ||||| | ||| | |||| ||||| ||| || | || Sbjct 48960 CTCAATATCTTCGCCATGAATGCCAACGGCAACACGCATGAGCATGTGCTGTGGTCGCT- 48902 Query 222565 CACAGGACCCTTGGAGCTGGA----GAGCAGGTACGATTTTTCCAGAGTCTTGAACCCAA 222620 ||| | |||| | | || || || || ||| ||| || |||||||| |||| Sbjct 48901 --CAGCAGTCTTGCCG-TCGATTCGTAGGAGATATGATCGTTCAAGTGTCTTGAATCCAA 48845 Query 222621 AGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTCCA 222665 || | | | || ||||||| | ||| ||| | |||| || || Sbjct 48844 AGAATTGGTAGTTGAAGTCTCGGTCGTAAACTATAGCGGAGTTCA 48800 Score = 93.3 bits (102), Expect = 8e-14 Identities = 324/496 (65%), Gaps = 20/496 (4%) Strand=Plus/Minus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGA 221476 || || |||||||||||||||||||| || || |||| || |||||||||| ||| Sbjct 50085 GTGAGCGCAGCGTGGTAGATGGTCTCGAAAATTTGAATGTTAAGCTTCTTGGCCTCTGGA 50026 Query 221477 GAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCG 221536 ||| ||| || | ||| || | ||| | || || || ||||| || || | ||| Sbjct 50025 GAATCGAAAGGAAGACGAAGAGCAAGGAAGGCATCAGCAAGACCCTGGACGCCAAGACCA 49966 Query 221537 ATGGGCCTGTGTCTCCTGTTGGAAGCGGC-CGCTTCTGGCACGGGATAAAAGTTGACGTC 221595 ||||||| || | ||| | ||||| || ||| || || ||| |||||| || Sbjct 49965 ATGGGCCGATGACGGAAGTT-GCTGCGGCGAGCCTCTTCGACAGGGTAATGGTTGACTTC 49907 Query 221596 GATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATT 221655 ||| | || ||||| || |||| | ||||| || || ||| || || ||| Sbjct 49906 GATGATTTTATTGAGATTGCGAGTCACGACTTGGACTACTTCGTGCAACT--TGG----- 49854 Query 221656 GAACACCA-ACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGG 221714 || | || | || || | | || | ||||| || | ||||||| | Sbjct 49853 CAAAATCATATTCACCACGATTGTAG------TCCACGAAGGACGGGAGGGCAAGAGACG 49800 Query 221715 CCAGGTTACACACGGCCACCTCGTC-CTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 | || ||||| || ||||| ||||| || | || |||| || |||||||| || || Sbjct 49799 CAAGATTACAGACAGCCACTTCGTCGGGTGCT-GTGTACTCGATAATCTCTGTGCAAAGA 49741 Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833 ||| || || || ||||| | || || || ||| |||||| ||||| ||| Sbjct 49740 TTGGAGCTGCGAATAGTTCCCAGATTCTTCTGGTTGCTCTTCCGATTGCAGGCGTCTTTG 49681 Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCT 221893 |||||||| | || ||| ||||| || ||| | ||||| || ||| || | | Sbjct 49680 TAGAGCATGTATGGGTTGCCGGTCTCGGTTTGGGCCTCGAGAATGGCGTACCAAAGCT-T 49622 Query 221894 CTG-GCGCTCACCGTC 221908 ||| || | |||||| Sbjct 49621 CTGAGCACGAACCGTC 49606 >seq1023 Length=12933 Score = 102 bits (112), Expect = 2e-16 Identities = 168/235 (71%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| |||||||||||||||| || || ||||||||||||||| |||||||| Sbjct 6654 ATCTGGCAGATGTACAAGAAGGCAGAAGCATCCTTCTGGACCGCCGAAGAAATTGATCTA 6713 Query 25537 GCCAAGGACATGGACGGCTGGTAC--GC-TCTATCCAAAGACGAGCAGCAT-TTTCTCAA 25592 |||| || | ||| |||| || || ||| ||| ||||||| || | ||| | Sbjct 6714 TCCAAAGATCTTCACGACTGGAACAAGCGTCTCAACAACGACGAGC-GCTTCTTTATTTC 6772 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 |||| | |||||||| ||||| || |||||||| || || ||||| || ||| | Sbjct 6773 CCACGTCCTCGCATTCTTCGCAGCATCAGATGGTATCGTCAATGAGAACTTGGTTGAGCG 6832 Query 25653 ATTCACCAGGGAAGTGC-AGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 ||||| | | ||||| | ||||| | || | | || || || || |||||||| Sbjct 6833 ATTCAGCGGCGAAGTACAAGTACCAGAAGCGCGA-TGCTTTTATGGCTTCCAGAT 6886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928813103171200