Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glonium_20stellatum_20[genbank_20GCA_5F001692915.1_202016-07-26] 2,730 sequences; 40,521,621 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1886 185 1e-41 seq1044 105 8e-18 seq8 102 9e-17 seq1467 89.7 6e-13 >seq1886 Length=76891 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||| ||||| |||||||||||||| |||||| Sbjct 23638 ATGCAGATCTTCGTCAAGACACTCACCGGAAAGACCATTACTCTTGAGGTCGAGTCATCG 23697 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | ||| | || || |||||||||||||| || ||||||||||| Sbjct 23698 GATACTATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGTATCCCTCCAGACCAA 23757 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| || ||||||| || ||||| | || ||||| Sbjct 23758 CAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCCGATTATAAC 23817 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || || ||||| ||||| || ||| | ||||| || ||||| Sbjct 23818 ATTCAGAAAGAGTCCACCCTTCACCTTGTCCTCCGTCTGCGTGGTGG 23864 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || |||||||| ||||| ||||| || ||||| || || || || Sbjct 23866 ATGCAGATTTTCGTTAAGACGCTCACCGGAAAGACCATCACTCTCGAAGTCGAATCGTCG 23925 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| ||||| |||| || ||||||||||| || ||||| || || || Sbjct 23926 GATACTATTGATAATGTGAAGTCTAAGATCCAGGACAAGGAAGGCATTCCCCCGGATCAA 23985 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||| || ||||| || ||||||| || || || | ||||| || Sbjct 23986 CAGCGTCTCATCTTTGCGGGCAAGCAGCTTGAGGATGGCCGAACGCTCTCCGACTACAAC 24045 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||||||||| |||||||| | || | ||||| || ||||| Sbjct 24046 ATTCAAAAGGAATCTACTCTTCACTTGGTGCTCCGTCTCCGTGGTGG 24092 Score = 123 bits (136), Expect = 3e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || || |||||||| ||||| |||| || | || | ||| | Sbjct 23434 ACCGGCAAGACCATCACCCTTGAGGTGGAGTCGTCCGATACTATCGACAACGTTAAGTCG 23493 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || ||||||||||| || || || || ||||||||||| | || || || || ||| Sbjct 23494 AAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAGCGCTTGATCTTCGCGGGCAAG 23553 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || ||||| || | | || || | ||||| ||| |||| ||||| |||||||| ||| Sbjct 23554 CAGCTCGAAGACGGCAGGACTCTGTCGGACTACAATATCCAGAAGGAGTCCACTCTACAT 23613 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || || | || ||||| ||||| Sbjct 23614 CTCGTGCTCCGCCTTCGTGGTGG 23636 >seq1044 Length=7244 Score = 105 bits (116), Expect = 8e-18 Identities = 282/430 (66%), Gaps = 6/430 (1%) Strand=Plus/Plus Query 31984 GACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTCG 32043 || ||| |||||||| ||||| ||||| | || | ||| ||||| || || | Sbjct 3375 GATGGCTTCAAGCCTGGTCAGCGGAAGGTTCTTTATACTTGCTTCAAGCGAAATCTAAAG 3434 Query 32044 AGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCAC 32103 | || | |||||| | | || | |||| |||| | | |||| |||| | Sbjct 3435 AAGGATACGAAGGTTGTTGACCTTGCTGGCTCCGTGTCTGGTACTACGGACTATGCATAT 3494 Query 32104 GGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAAT 32163 || ||||| || | ||| ||||| | || |||||||||||||| ||| |||| Sbjct 3495 GGTGAGGCATCCATGCAGCAGACCATCATTGGTCTCGCTCAGAACTTTGTGGGTTCAAAC 3554 Query 32164 AACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGAT 32223 ||| | || | || ||||| ||| | ||||| | || || || |||| || Sbjct 3555 AACATCAATTGTCTAGAGCCTAGCGGAAATTTTGGAAGTCGTCTTCAAGGCGGCAGTGAC 3614 Query 32224 GCTGCGAGCTCCCGTTACATCTTCACCCGTCTCGCACCTTCGACGCGCAAGATTTTCGAC 32283 || || ||| | ||||||| || ||| | || | || | |||||| || ||| | Sbjct 3615 GCGGCCAGCCCTCGTTACACCTACACGAGGCTTTCCCCCTTTGCGCGCAGAATATTCCAT 3674 Query 32284 CCGTCGGACGATGCGGTGCTCAAGTACAATTTTGA---TGACGGTCAGCGGGTCGAGCCG 32340 | ||||| || | ||||||| || ||| |||||| ||| | ||||||| Sbjct 3675 GCTCATGACGACGCAATTCTCAAGT---ATGGTGAGAGTGACGGGCAGACGATCGAGCCT 3731 Query 32341 GTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGGAACG 32400 | | | ||| || || |||||||||||| |||| ||||||||||| ||||| || || Sbjct 3732 GAGATGTACGTACCTGTCCTTCCGATGATCCTGGTCAACGGTGCAGATGGCATTGGTACT 3791 Query 32401 GGGTTCAGTT 32410 || | |||| Sbjct 3792 GGTTGGAGTT 3801 >seq8 Length=21116 Score = 102 bits (112), Expect = 9e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 ||||||||||| ||||| || ||||| ||||| || || || || || |||||||| ||| Sbjct 1545 GACAAGGAGGGCATTCCCCCGGACCAACAGCGCCTGATCTTCGCCGGCAAGCAACTTGAG 1486 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 || | || || || | ||||| || |||| ||||| || ||||| || || ||| | Sbjct 1485 GACGGCCGCACGCTCTCCGACTACAACATCCAGAAGGAGTCGACTCTCCACCTCGTCCTC 1426 Query 27619 CGTCTTCGCGGTGG 27632 |||||||| ||||| Sbjct 1425 CGTCTTCGTGGTGG 1412 >seq1467 Length=78481 Score = 89.7 bits (98), Expect = 6e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || ||||| ||||||||||| ||||| |||||| |||||| || | |||||| | Sbjct 50685 GTACGCAGGTAGTACATGCCAGTCTTTAGGCCCAACTTCCATCCAGCGAAGTGCATGCTA 50626 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 ||| ||| | | || || | | |||| ||||| || ||||| || ||| ||| Sbjct 50625 GTGATCTTGCCCATGGTCGGCTCTTTCATGTGAATGTTGAGGGACTGGGATTGATCAATG 50566 Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGT 80216 ||||| ||||| || || ||||||| | ||| | ||| | ||||||||| ||||| Sbjct 50565 AAAGCACCACGGTCAGCAGCCATTTGTACAATGGTACGTTGAGAAATTTCCCAGACTGT 50507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570290938157600