Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glonium_20stellatum_20[genbank_20GCA_5F001692915.1_202016-07-26] 2,730 sequences; 40,521,621 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1886 122 6e-23 >seq1886 Length=76891 Score = 122 bits (134), Expect = 6e-23 Identities = 150/202 (74%), Gaps = 10/202 (5%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||||||||| || ||||| ||||| || |||||||||||||| || || || Sbjct 23866 ATGCAGATTTTCGTTAAGACGCTCACCGGAAAGACCATCACTCTCGAAGTCGAATCGTCG 23925 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| ||| | || | || || ||||| ||||| | || || ||||| Sbjct 23926 GATACTATTGATAATGTGAAGTC-TAAGATCCAGGACAAGGAAGGCATTCCCCCGGATCA 23984 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGA----CGAACGCACTTTAGGCGATT 23785 ||||||| | || ||||| ||||| || || || || ||||||| || ||| | Sbjct 23985 ACAGCGTCTCATCTTTGCGGGCAAGCAGCTTGAGGATGGCCGAACGCTCT----CCGACT 24040 Query 23786 ACAACATACAAAAAGAGTCCAC 23807 ||||||| ||||| || || || Sbjct 24041 ACAACATTCAAAAGGAATCTAC 24062 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || ||||| ||||| || || ||||| || || || || || Sbjct 23638 ATGCAGATCTTCGTCAAGACACTCACCGGAAAGACCATTACTCTTGAGGTCGAGTCATCG 23697 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| | || ||| | || | || | | ||||| || ||| | || ||||| || Sbjct 23698 GATACTATCGACAATGTCAAGTCGAAGA-TCCAGGACAAGGAGGGTATCCCTCCAGACCA 23756 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || || || ||||| || || || || | ||||| | |||||| || Sbjct 23757 ACAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCCGATTATAA 23816 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 23817 CATTCAGAAAGAGTCCAC 23834 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || || || || || ||||| || ||| | |||||||| || | Sbjct 24094 ATGCAAATATTCGTCAAGACTCTAACCGGCAAAACCATTACTTTGGAAGTTGAATCTTCA 24153 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||| | | || || ||| || || || || | || || |||||| Sbjct 24154 GATACTATTGACAACGTCAAGTCTAAGATTCAGGATAAGGAGGGCATTCCTCCGGATCAA 24213 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTACA 23788 |||||| | || || |||||||| || |||| |||| || |||||| ||| |||| Sbjct 24214 CAGCGTCTGATTTTCGCCGGCAAGCAGTTGGAGGACGGCCGAACACTTT--CCGACTACA 24271 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGT 23819 |||| ||||| ||||| || | ||||| || Sbjct 24272 ACATCCAAAAGGAGTCAACTCTCCATTTGGT 24302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337998353786840