Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq25 89.7 1e-12 >seq25 Length=315089 Score = 89.7 bits (98), Expect = 1e-12 Identities = 267/404 (66%), Gaps = 6/404 (1%) Strand=Plus/Minus Query 230237 CCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCA 230296 ||||||| |||||| ||| ||| ||||||| || || | || |||||| | | Sbjct 43393 CCATCTTCTGGCTGAAGAAGCGAGGCCTGATGCCCGGTCTGACCTTCTCCAACGAGCTGA 43334 Query 230297 TCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAGCTCCAG 230355 || || ||||||||||| || || | | |||| | || ||| || | || || Sbjct 43333 TCTCGCGTGACGAGGGTCTGCA-CACCGACTTCGCCTGCCTGCTGTTCTCGCACCTGAAG 43275 Query 230356 AACAAGC-TACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAA 230414 ||| | || || | | || || | | |||||| || || ||| | ||| | Sbjct 43274 AACCGCCCTAGCAAGCAGGTCG-TCGAGGACATCATTGTCGATGCCGTTCGCATCGAGCA 43216 Query 230415 GGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACTTATGG 230473 |||||| | || ||| | || || ||| || | ||||||||| | || ||| Sbjct 43215 AGAGTTCCTGACCGAGGCTCTGCCGTG-CGCTCTGCTCGGCATGAACTCCACCCTCATGA 43157 Query 230474 GACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGT 230533 |||||||| || ||||| || |||||| | | || || || || ||||||| || | Sbjct 43156 AGCAGTACATTGAGTTCGTGGCTGACCGCCTGCTGGTGGCTCTCGGCAACGAGAAGGTCT 43097 Query 230534 ACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACT 230593 | | | |||||||| | || |||||| ||| || || || |||||||||| Sbjct 43096 TCCGCGTCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACT 43037 Query 230594 TCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 ||||||| ||||| ||| | || || |||| | | ||||| ||| Sbjct 43036 TCTTCGAGAAGCGCGTCGGCGAGTACCAGAAGGCCGGTGTCATG 42993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057822915730400