Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq1 125 8e-24 >seq1 Length=2664519 Score = 125 bits (138), Expect = 8e-24 Identities = 208/298 (70%), Gaps = 2/298 (1%) Strand=Plus/Minus Query 145870 ACGTAGAACTG-GCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGG 145928 ||||||||||| ||| | | ||| || || ||||| |||||| ||||| || ||| Sbjct 1365156 ACGTAGAACTGAGCA-AACATGTGACACGGTGGCAGCGCCATGCTAGGCAGATCTCGCGG 1365098 Query 145929 GTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTATCAG 145988 ||||| || | |||| || || | | | | ||||| || | || ||||| Sbjct 1365097 ATTCCAAGCTGAAAGGAGGATCCGGCGGTTGTAGGGGTCTGTCCGAAGCTTGTGTATCAC 1365038 Query 145989 GTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGCGGC 146048 ||| | ||| || || ||||| ||| ||| || ||||| | || || || |||| Sbjct 1365037 GTCGGCCAACTGATCAACACCCTGACCCGTGTAGTCCGTCTTTGCATCTACATATTCGGC 1364978 Query 146049 CCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCC 146108 |||||||||| |||||| || |||||||| || |||||||| ||| || | ||| Sbjct 1364977 ACCGAAGTGCCGCCACTGAAAGCCGTAGACAGGTCCCAGGTCACCGACTTCACGGTGAGA 1364918 Query 146109 CAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCCC 146166 || |||| | | | ||||||| || || || || ||| ||||||| ||||| || ||| Sbjct 1364917 CAACCCGACGCTGTCGAGGAATTCGCGCGATCCATTGCCGTCCCATATCTTCACTCCC 1364860 Score = 84.2 bits (92), Expect = 3e-11 Identities = 134/191 (70%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 145661 GGCTCCTGGTC-AGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCC 145719 |||||| | || | |||||| | ||| | ||| |||| | |||||||| ||||| Sbjct 1365423 GGCTCCCGCTCCAACTGGAGTTGCAGCGCCTCAGTATGGTCAACATAGACGTGTGCGTCA 1365364 Query 145720 CCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTC 145779 |||| ||||| | ||| || || | ||| | || | || | ||| | ||| Sbjct 1365363 CCCATAACGTGCGTCAAGCTTCCCGGAACCAGGTCGCAGACTCGAGCAATCATATGCGTC 1365304 Query 145780 AGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGG 145839 | ||||| ||||| || || ||||| ||||| || || |||||||| | ||||||||| Sbjct 1365303 AACAGGGCATAGCTTGCAATATTGAACGGCACTCCGAGACCCATGTCGCAGGAGCGCTGG 1365244 Query 145840 TACAGCTGGCA 145850 || |||||||| Sbjct 1365243 TAGAGCTGGCA 1365233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590076209923200