Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq31 98.7 1e-15 seq23 86.0 8e-12 >seq31 Length=224113 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/201 (71%), Gaps = 12/201 (6%) Strand=Plus/Plus Query 150993 CGAGCCCTACGCGGCCGCCGTCTTCATGGGCCCCATCTACTACCTGCGGCTGCGGCACCT 151052 |||||| || |||| |||||||| || ||||||||||||| ||| || |||| | Sbjct 199071 CGAGCCGCTCGAGGCCTACGTCTTCAACGGGCCCATCTACTACCAGCGCCTCAAGCACAT 199130 Query 151053 CACGCAGGACAAGGCCACGGTGCGCTGCCGCGGCAAGAAGAC------CAAGCTGATCCG 151106 ||||||||| ||| || |||| |||| | | || || | ||| Sbjct 199131 GGTCCAGGACAAGA------TGCACTCGCGCGCCAAGGGGCCGCGCGCCATCCTCACCCG 199184 Query 151107 GCAGGCCAACGAGGGCCGCAAGCGAGGCGGCGGCATCAAGTTCGGCGAGATGGAGCGCGA 151166 ||| ||| |||||||||| || | ||||||| | ||||||||||||||||||| Sbjct 199185 CCAGCCCACCGAGGGCCGCTCCCGCGACGGCGGCCTGCGCCTCGGCGAGATGGAGCGCGA 199244 Query 151167 CTGCCTCATCGCGCACGGCGC 151187 |||||||||||| ||||||| Sbjct 199245 CTGCCTCATCGCCTACGGCGC 199265 >seq23 Length=2049035 Score = 86.0 bits (94), Expect = 8e-12 Identities = 73/89 (82%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 151104 CCGGC-AGGCCAACGAGGGCCGCAAGCGAGGCGGCGGCATCAAGTTCGGCGAGATGGAGC 151162 ||||| || ||| | ||||||||||||| |||||||||||| ||||||| ||||||| Sbjct 1001351 CCGGCCAGCCCATCAAGGGCCGCAAGCGCGGCGGCGGCATCCGCGTCGGCGAAATGGAGC 1001410 Query 151163 GCGACTGCCTCATCGCGCACGGCGCGGCC 151191 ||||| |||| |||| |||||| | ||| Sbjct 1001411 GCGACGCCCTCCTCGCCCACGGCACCGCC 1001439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608796191203200