Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq25 205 1e-47 seq76 154 2e-32 seq45 141 1e-28 seq12 140 3e-28 >seq25 Length=315089 Score = 205 bits (226), Expect = 1e-47 Identities = 219/286 (77%), Gaps = 5/286 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| ||||||||||| | ||||||| | |||||| Sbjct 43911 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCGTTCTGGACTGCCGAGGAGATTGACCTG 43852 Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAA 116751 |||||||| | | | |||||| | || ||||||| |||||||| | ||| || Sbjct 43851 TCCAAGGATCTCCAT-GACTGGAACAACCGTATGAACGATGACGAGCGCTACTTCGTCTC 43793 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||| | ||||| || || |||||| |||||||| ||||||||||| ||||||||||| Sbjct 43792 CCACATCCTGGCGTTCTTTGCCGCCTCGGACGGCATTGTCAACGAGAACCTGGTCGAGCG 43733 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| | ||||| || || | ||||| || |||||||||||||| |||||| || Sbjct 43732 CTTCAGTGGCGAGGTCCAAGTCCCTGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGAT 43673 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||||||| | |||||||| | || || |||||| ||||| ||| Sbjct 43672 GGAGAACATCCACTCGGAGACCTACTCCCTCCTCATTGACACCTAC 43627 Score = 190 bits (210), Expect = 2e-43 Identities = 274/384 (71%), Gaps = 2/384 (1%) Strand=Plus/Minus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 |||||||||| ||||| |||| ||||||| | | || ||| || |||| | ||||| Sbjct 43504 AGAAGGCCGATTGGGCTCTGCACTGGATCTCTGACAAGGAGTCCACCTTTGCTCAGCGCT 43445 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| || ||||| || || ||||| ||||||| || ||| | |||| || | Sbjct 43444 TGGTCGCTTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCTCGTCCATCTTCT 43385 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| || ||||| |||||||| ||||| ||| ||||||||| ||||| | | Sbjct 43384 GGCTGAAGAAGCGAGGCCTGATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCGCGTG 43325 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221 ||||||||||||| |||||| ||||| |||||||| ||| || | | || || | Sbjct 43324 ACGAGGGTCTGCACACCGACTTCGCCTGCCTGCTGTTCTCGCACCTGAAGAACCGCCCTA 43265 Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281 || | | |||| ||| ||| | ||| || || ||||||||| ||||| | Sbjct 43264 GCAAGCAGGTCGTCGAGGACATCATTGTCGATGCCGTTCGCATCGAGCAAGAGTTCCTGA 43205 Query 117282 CCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATC 117340 |||| || ||||| ||||| |||||| || | || | | ||| ||| ||||| Sbjct 43204 CCGAGGCTCTGCC-GTGCGCTCTGCTCGGCATGAACTCCACCCTCATGAAGCAGTACATT 43146 Query 117341 GAGTTCGTCGCCGACAGGCTGCTG 117364 |||||||| || ||| | |||||| Sbjct 43145 GAGTTCGTGGCTGACCGCCTGCTG 43122 >seq76 Length=1205562 Score = 154 bits (170), Expect = 2e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || |||||||| || ||||| ||| |||| || || || | Sbjct 522337 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATTACCCTCGAGGTTGAGTCCTCG 522278 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | ||||| || || | ||||| |||||||| ||| | |||||| Sbjct 522277 GACACGATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 522218 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||||||||| |||||||| |||| ||||||||| |||||||||| Sbjct 522217 CAGCGCCTGATCTTCGCGGGCAAGCAGCTGGAGGACGGCCGCACCCTCTCCGACTACAAC 522158 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| ||| ||||| || || |||| Sbjct 522157 ATCCAGAAGGAGAGCACCCTGCACCTGGTCCTGCG 522123 >seq45 Length=1349219 Score = 141 bits (156), Expect = 1e-28 Identities = 165/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || ||||| ||||| ||||||||| | || ||||| || | |||| | Sbjct 1003151 TTCGTGAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTCGAGTCCTCGGACACGATC 1003210 Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | |||| ||||| || || | ||||| ||||||||||| | ||||| || || || Sbjct 1003211 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAACAGCGCCT 1003269 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 |||| ||| ||||| |||||||| || | |||||||| |||||||||||||||||| Sbjct 1003270 GATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAA 1003329 Query 40878 GGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||| |||| || || || ||| | ||| || | || ||| Sbjct 1003330 GGAGTCCACCCTCCACCTGGTGCTCCGCCTGCGTGGTGGC 1003369 >seq12 Length=2460794 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || || || ||||| |||||||| |||| || || | Sbjct 54249 AATATGCAGATCTTCGTCAAGACCCTTACCGGCAAGACCATCACTCTCGAGGTTGAGTCG 54308 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | ||||| || |||| ||||| |||||||| ||| | || Sbjct 54309 TCTGACACCATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCAGAT 54368 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || || || || || | ||| ||||| ||||| || |||| |||||||| | ||||||| Sbjct 54369 CAACAGCGCCTTATTTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGAGCGACTAC 54428 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||||| ||| |||||||| ||| | ||| || | || || Sbjct 54429 AACATCCAGAAGGAGAGCACCCTGCATCTGGTGCTCCGCCTGCGTGGTGG 54478 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || ||||| || ||||| | || || || | | Sbjct 54936 ATGCAAATTTTCGTCAAGACCCTTACCGGCAAGACGATCACGCTGGAGGTTGAGTCTTCG 54995 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | ||| || |||| ||||| |||||||| || | ||||| Sbjct 54996 GACACGATCGACAACGTT-AAGTCGAAGATTCAGGACAAGGAGGGCATTCCGCCAGACCA 55054 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| || ||||||||||| || | || ||||||| |||||||| Sbjct 55055 GCAGCGCTTGATCTTCGCTGGAAAACAGCTGGAGGATGGCCGTACCCTCAGTGACTACAA 55114 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | |||||||| || || |||| | | |||||| Sbjct 55115 CATCCAGAAGGAGTCTACGCTGCACCTGGTTCTGCGGCTTCGCGGCGGC 55163 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| || ||||| | || || ||| | | Sbjct 54480 ATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACGATCACGCTGGAGGTGGAATCTTCG 54539 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | ||||| || |||| ||||| ||||||||||| | |||||| Sbjct 54540 GATACCATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCGCCAGACCAG 54599 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || ||||| || ||||| || | ||||| || | |||||||||| Sbjct 54600 CAGCGCCTTATCTTTGCTGGCAAGCAACTGGAGGATGGCCGCACTCTGAGCGACTACAAC 54659 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 || || |||||| ||| || || || ||| Sbjct 54660 ATTCAAAAGGAGAGCACTCTTCACCTGGTG 54689 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| || ||||| | || || || | | Sbjct 54708 ATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACGATCACGCTGGAGGTGGAGTCTTCG 54767 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | ||| || || | ||||| |||||||| || | ||||| Sbjct 54768 GATACCATTGACAACG-TGAAGTCGAAGATCCAAGACAAGGAGGGCATTCCGCCAGACCA 54826 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| || || |||||||| || | || ||||||| |||||||| Sbjct 54827 GCAGCGCTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGCCGTACCCTCAGTGACTACAA 54886 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||| |||||| ||| || || || ||| |||| || | || ||| Sbjct 54887 CATCCAAAAGGAGAGCACTCTTCACCTGGTGCTGCGTCTGCGTGGTGGC 54935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218684780800