Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq12 136 3e-27 seq45 111 1e-19 seq18 100 2e-16 seq76 98.7 9e-16 >seq12 Length=2460794 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || ||| |||||||||||||| ||||||| |||||| |||||| Sbjct 54689 CACCAGGTGAAGAGTGCTCTCCTTTTGAATGTTGTAGTCGCTCAGAGTGCGGCCATCCTC 54630 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 || || || ||||| |||| || |||||||| || || || |||||||||||||| Sbjct 54629 CAGTTGCTTGCCAGCAAAGATAAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTG 54570 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | |||| ||| |||| || ||||| | || | ||| || Sbjct 54569 AATCTTCGACTTGACATTGTCGATGGTATCCGAAGATTCCACCTCCAGCGTGATCGTCTT 54510 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||||||| || ||||| |||||||| Sbjct 54509 GCCGGTCAGAGTCTTGACAAAGATCTGCAT 54480 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | | || |||| ||| | |||||||| || || |||||||| || || Sbjct 55162 CCGCCGCGAAGCCGCAGAACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCACTG 55103 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || || |||||| ||||||||||||||| |||| | |||||||| || || || Sbjct 55102 AGGGTACGGCCATCCTCCAGCTGTTTTCCAGCGAAGATCAAGCGCTGCTGGTCTGGCGGA 55043 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 |||||||||||||| ||| || ||||| | |||| ||||||| ||| ||| Sbjct 55042 ATGCCCTCCTTGTCCTGAATCTTCGACTTAACGTTGTCGATCGTGTCCGAAGACTCAACC 54983 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || | || | ||| |||||||| || || || || ||||| |||||| Sbjct 54982 TCCAGCGTGATCGTCTTGCCGGTAAGGGTCTTGACGAAAATTTGCATG 54935 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || ||| ||||| |||||||| || || | || || ||| Sbjct 54920 CAGCACCAGGTGAAGAGTGCTCTCCTTTTGGATGTTGTAGTCACTGAGGGTACGGCCATC 54861 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| ||||| ||| |||| | |||||||| || || || |||||||||||||| Sbjct 54860 CTCCAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTC 54801 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | || || || || | || | ||| |||| ||| ||||| | || | ||| Sbjct 54800 TTGGATCTTCGACTTCACGTTGTCAATGGTATCCGAAGACTCCACCTCCAGCGTGATCGT 54741 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||||||||| || ||||| |||||||| Sbjct 54740 CTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 54708 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 ||| || || |||||||| ||||||| ||||| ||||| ||||| || |||||| | Sbjct 54443 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAA 54384 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666 || || ||||| ||||| || || |||||||||||||| ||| || || || | Sbjct 54383 AATAAGGCGCTGTTGATCTGGGGGAATGCCCTCCTTGTCCTGAATCTTCGACTTGACATT 54324 Query 118667 TTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 |||| |||||| | ||| ||||||| || | || |||||||| || || || || Sbjct 54323 GTCGATGGTGTCAGACGACTCAACCTCGAGAGTGATGGTCTTGCCGGTAAGGGTCTTGAC 54264 Query 118727 AAAAATCTGCAT 118738 || |||||||| Sbjct 54263 GAAGATCTGCAT 54252 >seq45 Length=1349219 Score = 111 bits (122), Expect = 1e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||||| || ||||| || || |||||||| ||| || ||||| |||||| Sbjct 1003351 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTC 1003292 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || |||||| |||| || ||||| || || || || |||||||||||||| Sbjct 1003291 CAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCAGGCGGGATGCCCTCCTTGTCCTG 1003232 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| ||||||| | ||||||||| | ||| | || || Sbjct 1003231 GATCTTGGACTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCCAAGGTGATGGTCTT 1003172 Query 118709 GCCGGTCAGAGTTTTTACAAA 118729 ||| || || || || || || Sbjct 1003171 GCCAGTGAGGGTCTTCACGAA 1003151 >seq18 Length=496665 Score = 100 bits (110), Expect = 2e-16 Identities = 136/187 (73%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 133222 GGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACG 133281 |||| ||||| || ||||||||||| || || || | | || | || || ||| | | Sbjct 376762 GGTTCACCACCTGGAACTCGCCGGCCAGCACACGGCGCTGGTAAATGTTGGAGGTGTAGG 376821 Query 133282 GTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCA 133341 | || || | ||||||||||| || ||||| | ||||| ||||| |||||| ||||| Sbjct 376822 GCTCAAAGCACTCGTTGTTGCCCAGGATCTGTGACGTCGAGGCCGTCGGCATGGGCGCCA 376881 Query 133342 CCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTT-GCACTGCAATTCGTTCCAGTCC 133400 || || | ||| | | ||||| ||| || || || |||| ||| || |||||||| Sbjct 376882 TCAGCAGACTGTTGCGGATGCCGTGCTTCTTGATCTTGGCAC-GCAGCTCAGTCCAGTCC 376940 Query 133401 CACAGAT 133407 ||||||| Sbjct 376941 CACAGAT 376947 >seq76 Length=1205562 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| ||||| | | || |||| ||| | || ||| || || |||||||| ||| Sbjct 522110 ACCGCCGCGAAGACGCAGGACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGA 522169 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | ||||| ||||| ||||| || || ||| |||| || |||||||| || || || Sbjct 522170 GAGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCTGGGGG 522229 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 |||||||||||||| || || || || | |||| ||||||| | ||| || Sbjct 522230 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCAAC 522289 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| ||| | || || || || || || || || || ||||||||| Sbjct 522290 CTCGAGGGTAATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATG 522338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433829977015360