Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq45 131 4e-25 >seq45 Length=1349219 Score = 131 bits (144), Expect = 4e-25 Identities = 274/406 (67%), Gaps = 18/406 (4%) Strand=Plus/Plus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 ||||| || |||| ||| |||| || ||||| || ||||||||||| || ||||||||| Sbjct 525209 CTTCCGCACATGCTCTTCTACGGGCCGCCCGGGACCGGCAAGACGTCGACGATCCTGGCG 525268 Query 254061 CTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCT 254120 |||||| |||| ||| | | ||||| ||| ||||| ||||| ||||| Sbjct 525269 CTGGCCAAGGAGCTGTACGGCCCCGAGTTCATGAAGTCGCGGGTGCTGGAGCTCAACGCG 525328 Query 254121 TCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAG-ACTTTCTCCA-----AG 254174 || ||||| ||||| | | || ||||| ||| ||||| ||||| | || Sbjct 525329 TCGGACGAGCGCGGCATCTCGATTGTGCGCGAGAAGGTCAAGGACTTTGCGCGGATGCAG 525388 Query 254175 ATGTCGATTTCGTCGT-----TCCAACCCG-GCT------GTCCGCCTTTCAAGCTCGTG 254222 || | | || || | ||| || ||| | ||||| |||||||| | Sbjct 525389 CTGACCAACCCGCCGCCGGGCTACAAGGCGCGCTACCCGTGCCCGCCGTTCAAGCTGATC 525448 Query 254223 ATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATG 254282 | ||||||||||| ||| |||||||| ||||||||| ||| || ||||| || ||| Sbjct 525449 GTGCTGGACGAGGCCGACTCCATGACGCAGGACGCGCAGAGCGCGCTGCGCCGCACCATG 525508 Query 254283 GAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCATC 254342 |||||| || | | || || || ||||| | ||||||||||| | |||||| Sbjct 525509 GAGACGTACAGCAAGATCACCCGCTTCTGCCTCATCTGCAACTACGTCACCCGCATCATC 525568 Query 254343 GCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCAGCACCCTCG 254388 | ||| || || || ||| |||||| || |||| | ||||| Sbjct 525569 GACCCCCTCGCCAGCCGCTGCAGCAAGTTCCGCTTCAAGAGCCTCG 525614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073765299389440