Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq12 140 3e-28 seq76 122 7e-23 seq45 105 5e-18 >seq12 Length=2460794 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| | || | || |||| ||| || ||||||||||| ||||||||||||||| || Sbjct 54706 CCACCACGCAGACGTAGCACCAGGTGAAGAGTGCTCTCCTTTTGAATGTTGTAGTCGCTC 54647 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || |||||||| || || || || || | ||||| ||||| || || Sbjct 54646 AGAGTGCGGCCATCCTCCAGTTGCTTGCCAGCAAAGATAAGGCGCTGCTGGTCTGGCGGG 54587 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||||||| ||| || ||| || | | | | ||| | |||||| Sbjct 54586 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCCGAAGATTCCACC 54527 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || ||||||||||| ||||||||||| |||||||| ||||| Sbjct 54526 TCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 54480 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||||||||||| || ||||||||||| | || || | || ||| Sbjct 54916 ACCAGGTGAAGAGTGCTCTCCTTTTGGATGTTGTAGTCACTGAGGGTACGGCCATCCTCC 54857 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||||||||| ||||| ||||| ||||| || || | ||||||||||| Sbjct 54856 AGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCTTGG 54797 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | ||| | ||||||||||| || ||||||||| Sbjct 54796 ATCTTCGACTTCACGTTGTCAATGGTATCCGAAGACTCCACCTCCAGCGTGATCGTCTTG 54737 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||||||||| |||||||| ||||| Sbjct 54736 CCGGTCAGAGTCTTGACAAAGATCTGCAT 54708 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||||||| ||||||||| ||||||||||| | || || | || ||| Sbjct 55144 ACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCACTGAGGGTACGGCCATCCTCC 55085 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || |||||||| ||||| ||||| ||||| ||||| || || | |||||||||||| | Sbjct 55084 AGCTGTTTTCCAGCGAAGATCAAGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCCTGA 55025 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || |||||| | | ||||| | ||| ||||||| || ||||||||| Sbjct 55024 ATCTTCGACTTAACGTTGTCGATCGTGTCCGAAGACTCAACCTCCAGCGTGATCGTCTTG 54965 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || ||||| || || ||||||||| Sbjct 54964 CCGGTAAGGGTCTTGACGAAAATTTGCATG 54935 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||| |||||||||||||| |||||||||||| |||| ||| |||| || Sbjct 54460 ACCAGATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCA 54401 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| || | |||||||| || || || | |||||||||||| | Sbjct 54400 AGCTGCTTGCCAGCGAAAATAAGGCGCTGTTGATCTGGGGGAATGCCCTCCTTGTCCTGA 54341 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| ||| ||||| | || || |||||| Sbjct 54340 ATCTTCGACTTGACATTGTCGATGGTGTCAGACGACTCAACCTCGAGAGTGATGGTCTTG 54281 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 || || || ||||| || ||||| ||||| ||| Sbjct 54280 CCGGTAAGGGTCTTGACGAAGATCTGCATATTG 54248 >seq76 Length=1205562 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| |||||||||||||| |||||||||||| || ||| |||| ||| Sbjct 522129 ACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCC 522188 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| ||||| ||||| || || | |||||||||||| Sbjct 522189 AGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGG 522248 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | ||||| ||| ||||| | |||||| ||||| Sbjct 522249 ATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCAACCTCGAGGGTAATGGTCTTA 522308 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||| || ||||| || ||||| |||||| Sbjct 522309 CCCGTGAGGGTCTTGACGAAGATCTGCATG 522338 >seq45 Length=1349219 Score = 105 bits (116), Expect = 5e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| ||||||||| |||||||||||| ||| ||| | || ||| Sbjct 1003350 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCC 1003291 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| ||||||||||| || || | |||||||||||| Sbjct 1003290 AGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCAGGCGGGATGCCCTCCTTGTCCTGG 1003231 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | ||||| ||| ||||||| ||| || |||||| Sbjct 1003230 ATCTTGGACTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCCAAGGTGATGGTCTTG 1003171 Query 45308 CCCGTCAGAGTCTTCACAAAG 45328 || || || |||||||| ||| Sbjct 1003170 CCAGTGAGGGTCTTCACGAAG 1003150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395074814801680