Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq18 453 1e-122 seq12 125 6e-24 seq25 113 4e-20 seq76 91.5 1e-13 seq45 87.8 2e-12 >seq18 Length=496665 Score = 453 bits (502), Expect = 1e-122 Identities = 1244/1892 (66%), Gaps = 46/1892 (2%) Strand=Plus/Plus Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCC 22164 || |||||| || ||||| |||| | || || | | |||||| || || |||||||| Sbjct 376415 CTGGTCCACAGTGAACTGGATGGGCTGGGCCGCGGCCTGGGTGCGCAGGTAGTACATGCC 376474 Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG 22224 ||||| ||||||| |||||| || || || || || | || || |||| Sbjct 376475 TGTCTTGAGACCCAGCTTCCAGCCGGCGAAGTGCATGCTGGTGATCTTGCCCATGGTCGG 376534 Query 22225 CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGC 22284 | | ||||| | |||| |||||| ||| || || || || || || ||||| || Sbjct 376535 CTCGCGCATGTGAATGTTGAGCGACTGCGACTGGTCAATGAAGGCGCCACGGTCGGCCGC 376594 Query 22285 CATATTTATCAAT-GTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCT 22343 ||| | | |||| || ||| ||| || ||||| || |||||||| || | || ||| Sbjct 376595 CATCTGCA-CAATAGTGCGCTGCGAGATCTCCCAGACCGTCTTGTAGAGCGCCTTGGTCT 376653 Query 22344 CTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAA 22403 | || || ||| |||||| ||| ||| | | ||||| || || | Sbjct 376654 CGTCAGGGATGTTGGGGATGTTCTGGATGGAACCGCCGTCGGCAATGATGCGGTTCTTCA 376713 Query 22404 TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTT 22463 | | ||| ||||| || || || || | ||| |||||||||| | Sbjct 376714 TGTTGTCGGACCACAGGTTCATCTCGACCAGGTCACGCAGCAGCCAGGGGTTCACCACCT 376773 Query 22464 GAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATT 22523 | |||||||||| || || ||||| |||||||||||||| ||| | || || || | | Sbjct 376774 GGAACTCGCCGGCCAGCACACGGCGCTGGTAAATGTTGGAGGTGTAGGGCTCAAAGCACT 376833 Query 22524 CATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGT 22583 | ||||| ||||| ||||| | ||||| || |||||||| ||||||| ||| || || Sbjct 376834 CGTTGTTGCCCAGGATCTGTGACGTCGAGGCCGTCGGCATGGGCGCCATCAGCAGACTGT 376893 Query 22584 TTCTCAAGCCGTGCTTTGAAATTTT---ACTCTTGAGCATCGACCAGTCCCACAGATCGG 22640 | | | ||||||||| || || || | ||| | ||||||||||||||| | Sbjct 376894 TGCGGATGCCGTGCTTCTTGATCTTGGCACGC---AGCTCAGTCCAGTCCCACAGATCCG 376950 Query 22641 ACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCC--GCGACTCGCCGGGCTGCC 22698 | ||||| ||||| |||||| || |||| | ||| ||||| | || ||| Sbjct 376951 AGGGCGTGACATT---CCACATGTCCGGCTGCAGGATGCCCTGCGACACA--GGCGAGCC 377005 Query 22699 TTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCC 22758 ||||||| |||| || | ||| |||| || |||| | ||| | || | Sbjct 377006 CTCGTACGACGCGTAGACGCCCTCGATCTCGGCCAGCTCGCTCGAGGTCTCGAGAGCAGC 377065 Query 22759 GTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCG-GCGGC---GGCGACGCTTTCGT 22814 || || || ||||||||||| | |||| | | | ||| | |||||| || Sbjct 377066 GTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTGCGCGCCTCGGGCGAC----TCAA 377121 Query 22815 ACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTC 22874 | ||||| |||| | || || || || |||| ||||| | || | ||| || || | Sbjct 377122 ATGGCATGCGCAGCGCCAAAAAGGCATCAGCCAGGCCCTGGATACCCACACCAATGGGAC 377181 Query 22875 GGTTTTTCAGATTCGACACTTTTGC----CTCGGGCAAAGGATACCAATTCGAATCGATT 22930 ||| || || || |||| |||||||| || || | || || || Sbjct 377182 GGTGGCGCATGTTG----CTGTTGCGAGCCTCGGGCACCGGGTAGTAGTTGACGTCAATG 377237 Query 22931 GTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAA 22990 | | ||||| ||| | || | || || | | |||||||| Sbjct 377238 ATGCGGTTCAGGTTGCGCACAACGACCTTGGTCACATCGTGCAGGGCCTTGAAGTCGTA- 377296 Query 22991 ACGCCC------GATTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACG 23044 || | || || | || || | ||| || ||||| || ||||| || Sbjct 377297 --GCTCTGGTTGGACTGGTCCACGAAAGCCGGCAGGGCAATGGAGGCCAGGTTGCAGACA 377354 Query 23045 GCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATC 23104 || |||||||| || || |||||| ||||| || || || | ||| | || Sbjct 377355 GCGACCTCGTCAGGGGCCGAGTACTCGACAATCTCCGTGCACAAGTTGGAGCTGCGGATG 377414 Query 23105 GTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGC 23164 |||||||| || |||||||||| || || ||||| |||||||| |||||| | || Sbjct 377415 GTGCCCAAGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAAGGGG 377474 Query 23165 GTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGT 23224 |||| |||||| ||| | ||| | || || ||||| ||||||| | | || Sbjct 377475 TTGCCGGTCTCGGTCTGGGCCTCAAGAATGGCATACCACAGCTTCTGAGCCTTGATG-GT 377533 Query 23225 CGCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTA 23283 | || | | ||| || | ||||||||||| ||||| || || || || | ||||| Sbjct 377534 GCCGCGGCCACGGCCCTCCTTCTCGTACTTTTCGTACAGGGCTTCGAACTCCTCGCCGTA 377593 Query 23284 ACAGTCGGCCAGGCC-GGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTT 23342 |||||||||||||| |||| | || | || |||||||| |||| | || || | Sbjct 377594 GCAGTCGGCCAGGCCAGGGCACTCGC-TAGGGCACATGAGCGTCCAGGTGCCGTTCTTCT 377652 Query 23343 CAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCA 23402 | ||||| |||| || ||||| |||||||| ||||| |||||| || |||||||| | Sbjct 377653 CCACGCGCTTCATGAACAGATCAGGTATCCACAGAGCCATGAACAGATCACGGGCGCGGA 377712 Query 23403 CCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACG 23462 |||||| |||||| |||||| || || | || || || ||||| || ||||||| Sbjct 377713 TCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCGAGGAACTCAAAGACGTCGGCGTGCCACG 377772 Query 23463 GCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGG 23522 |||| ||||| | | || ||||| || | ||| || |||||||| |||||||| || | Sbjct 377773 GCTCCAGGTAGATGCAGAAAGCGCCGGGGCGCTTGTTTCCGCCCTGGTCGACGTAGCGAG 377832 Query 23523 CCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCG 23582 ||||||||||| | || | ||||| || | || |||||||| | |||| ||| | Sbjct 377833 CCGTGTTGTTGAAGACGCGCAGCATGGGGATGATGCCGTTGGAGGTGCCGTTGGTGCCGG 377892 Query 23583 CCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATT 23642 | | || ||| | || || | | ||| | || || || ||||| || ||| | Sbjct 377893 CAATGTAGGATCCTGTGGCACGGATGCGGTGTATGTTGAGGCCAATGCCGCCAGCCGTCT 377952 Query 23643 TCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGG 23702 | || ||||| || || || || |||||||| ||||||||||||||||| || ||| Sbjct 377953 TGGAAATCATGGCACAGGTCTTGAGGGTGTCGTAAATGCCCTCGATGCTGTCGTCCTTGA 378012 Query 23703 TCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCG 23762 | |||||| ||| ||||| |||| || || | |||||| |||| ||| || || | Sbjct 378013 TGTCGACCAGGAAGCACGACGACAGCTGAGCCTGCGGCGTACCGGCGTTGAAAAGCGTGG 378072 Query 23763 GGCTGGCGTGCGTAAAGTATCCATTCGACAT-TAGATTGTACGTGTCGATGGCGGCATCA 23821 | |||||| || ||| | | ||||| ||| ||||| || || || | || Sbjct 378073 GTGAGGCGTGAGTGAAGGACTTGCTGGACATGTAG-TTGTAGGTCTCCATAACACGCTCG 378131 Query 23822 ATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACC 23881 | | || || || || | || |||||||| ||||||| ||||| | ||| || Sbjct 378132 ACATTGTCGCCCCAGATGCCCACAGCCACGCGCATAATCATGTGCTGAGGCCGCTCAACA 378191 Query 23882 GTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCA 23941 || ||| ||| | |||| ||| || || || | || || || || ||||| || | Sbjct 378192 ATGGCGCTGTTCAGCTTGAGCAGGTAGGAGCGCTCCAGGGTCTTGAAGCCAAAGTACTGG 378251 Query 23942 TAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 || || ||||| || || | || |||||||| Sbjct 378252 TAATTGAAGTCGCGGTCATAGACAATGGCCGA 378283 >seq12 Length=2460794 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||||||||| ||||| |||||||| | || || ||| | || Sbjct 54480 ATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACGATCACGCTGGAGGTGGAATCTTCG 54539 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | ||||| || || ||||||||| ||| | ||||| |||||| Sbjct 54540 GATACCATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCGCCAGACCAG 54599 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || || |||||||| || |||| || ||| ||||||| || ||| Sbjct 54600 CAGCGCCTTATCTTTGCTGGCAAGCAACTGGAGGATGGCCGCACTCTGAGCGACTACAAC 54659 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| || |||||||| ||||| || | ||| | || |||| Sbjct 54660 ATTCAAAAGGAGAGCACTCTTCACCTGGTGCTACGTCTGCGTGGTGGTA 54708 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||||||||| ||||| || || ||||| |||||||| | || ||||| | || Sbjct 54935 CATGCAAATTTTCGTCAAGACCCTTACCGGCAAGACGATCACGCTGGAGGTTGAGTCTTC 54994 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || || || || ||||||||| ||| | ||||| ||||| Sbjct 54995 GGACACGATCGACAACGTTAAGTCGAAGATTCAGGACAAGGAGGGCATTCCGCCAGACCA 55054 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || |||||||| |||||| |||| || || | || || || || Sbjct 55055 GCAGCGCTTGATCTTCGCTGGAAAACAGCTGGAGGATGGCCGTACCCTCAGTGACTACAA 55114 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || || || || ||||| || Sbjct 55115 CATCCAGAAGGAGTCTACGCTGCACCTGGTTCT 55147 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||| || || ||||| || ||||| |||| ||||| || Sbjct 54249 AATATGCAGATCTTCGTCAAGACCCTTACCGGCAAGACCATCACTCTCGAGGTTGAGTCG 54308 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| |||| | ||||| || || ||||||||| ||| | || || || Sbjct 54309 TCTGACACCATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCAGAT 54368 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || ||||| || || ||||||||||| ||| | || ||| || ||||||| || Sbjct 54369 CAACAGCGCCTTATTTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGAGCGACTAC 54428 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || || || || |||||||| || | ||| | || |||| Sbjct 54429 AACATCCAGAAGGAGAGCACCCTGCATCTGGTGCTCCGCCTGCGTGGTGGTA 54480 >seq25 Length=315089 Score = 113 bits (124), Expect = 4e-20 Identities = 219/319 (69%), Gaps = 16/319 (5%) Strand=Plus/Minus Query 57979 TCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGA 58038 |||| ||||| || || || ||||| ||||| || ||| || | || || ||| Sbjct 43441 TCGCTTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCTCGTCCATCTTCTGGC 43382 Query 58039 TGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACG 58098 ||||||| || |||||||||||||| ||||| || ||||||| |||| ||||| |||| Sbjct 43381 TGAAGAAGCGAGGCCTGATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCGCGTGACG 43322 Query 58099 AGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCG---- 58154 ||||||| || || || || || ||||| ||| ||| ||| | | ||||| Sbjct 43321 AGGGTCTGCACACCGACTTCGCCTGCCTGCTGTTCTCGCACCT----GAAGAACCGCCCT 43266 Query 58155 ---ACGCGGGATCGCATCTTGGACATTATCACCGA-GGCGGTCGCGATCGAAAATGAGTT 58210 | || || ||| || |||||| || ||| | || |||| ||||| | ||||| Sbjct 43265 AGCAAGCAGG-TCG--TCGAGGACATCATTGTCGATGCCGTTCGC-ATCGAGCAAGAGTT 43210 Query 58211 TGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTA 58270 | ||||| || || ||| || ||||||| |||||| | ||| |||| Sbjct 43209 CCTGACCGAGGCTCTGCCGTGCGCTCTGCTCGGCATGAACTCCACCCTCATGAAGCAGTA 43150 Query 58271 CATTGAGTTTGTTGCCGAC 58289 ||||||||| || || ||| Sbjct 43149 CATTGAGTTCGTGGCTGAC 43131 >seq76 Length=1205562 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||| || ||||| ||||| || || || || || || ||| |||| ||||| | Sbjct 522341 AATCATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATTACCCTCGAGGTTGAGTC 522282 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| |||| | ||||| | || ||||||||| ||| | || || || Sbjct 522281 CTCGGACACGATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGA 522222 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||||||| || || ||||| ||||| ||| |||| ||| Sbjct 522221 CCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTGGAGGAC 522182 >seq45 Length=1349219 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 31202 TTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTC 31261 ||||| ||||| || || ||||| || |||||| | || || || | || |||| || Sbjct 1003151 TTCGTGAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTCGAGTCCTCGGACACGATC 1003210 Query 31262 GAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 || | ||||| | || ||||||||| ||| | ||||| ||||| ||||| || Sbjct 1003211 GACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAACAGCGCCTG 1003270 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAA 31381 || ||||||||||| ||| |||| || || || ||| || ||||| || || Sbjct 1003271 ATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAG 1003330 Query 31382 GAATCGACTCTTCATCTGGTACT 31404 || || || || || ||||| || Sbjct 1003331 GAGTCCACCCTCCACCTGGTGCT 1003353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765954233600